Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0652 ATGGCGAACTCAGTGAAATTGTTTAATTCCTGGCCCAGCCTGTTTGGAATGAGAGTTCGAATCGCTTTGGCTGAGAAGGGAGTTAGCTACGAATACATAGAGGAGGATTTGTCTAACAAGAGTCCTTTGCTTCTCCAGCTGAACCCGGTTCACAAGAAGATCCCGGTTCTCGTTCACAACGGAAAACCCATCAACGAATCTCTCATTATCGTTCAGTATATTGATGAAGTGTGGAACGATAAGGTGCCTCTGTTGCCGTCCGATCCCTACGAGAGGGCTCAGGCCAGATTCTGGGTTGATTTCATCGACAAGAAGCTTTATGATGCTGGGAGTAGGACATGGGCGAAAGAGGGAGAGGAGCAAGAGGCAGCGAAGAGGGATTTGATAGAATATTTGAAGCAATTGGAGGAAGTTTTGGGAGAAAAGAGTTACTTTGGAGGAGAGAGTTTGGGATTTATTGATGTTGTTTTGATTGGTTACTATACAAGGTTTTCTACGTATCAAACTCTTGCAAACTTAAATGTGGAAGCTGAGTGTCCGAAGATAAGTGCTTGGGTCAAGAGGTGTCTTCAAAAGGAGAGTGTTTCAAAGTCCCTCCCTGACCCTCAGAAGATCTGTGACTTTTTTCTGAAATTGAAGAAGAAGAATTAA 651 43.78 MANSVKLFNSWPSLFGMRVRIALAEKGVSYEYIEEDLSNKSPLLLQLNPVHKKIPVLVHNGKPINESLIIVQYIDEVWNDKVPLLPSDPYERAQARFWVDFIDKKLYDAGSRTWAKEGEEQEAAKRDLIEYLKQLEEVLGEKSYFGGESLGFIDVVLIGYYTRFSTYQTLANLNVEAECPKISAWVKRCLQKESVSKSLPDPQKICDFFLKLKKKN 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38976200 38977737 + evm.model.ptg000003l.1140 HCH6g0652 546146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0652 216 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 208 IPR010987 -
HCH6g0652 216 FunFam Glutathione S-transferase U20 88 216 - -
HCH6g0652 216 CDD GST_C_Tau 89 212 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
HCH6g0652 216 Pfam Glutathione S-transferase, C-terminal domain 115 192 IPR004046 -
HCH6g0652 216 SUPERFAMILY GST C-terminal domain-like 76 214 IPR036282 -
HCH6g0652 216 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
HCH6g0652 216 SUPERFAMILY Thioredoxin-like 4 107 IPR036249 -
HCH6g0652 216 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
HCH6g0652 216 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 209 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
HCH6g0652 216 SFLD Main.3: Omega- and Tau-like 3 215 IPR045073 -
HCH6g0652 216 Gene3D Glutaredoxin 1 87 - -
HCH6g0652 216 Gene3D - 88 216 - -
HCH6g0652 216 SFLD Glutathione Transferase (cytosolic) 3 215 IPR040079 -
HCH6g0652 216 CDD GST_N_Tau 5 78 - -
HCH6g0652 216 FunFam Tau class glutathione S-transferase 1 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0590 HCH-Chr6:34991917 HCH6g0652 HCH-Chr6:38976200 2.40E-122 dispersed
HCH6g0652 HCH-Chr6:38976200 HCH6g0654 HCH-Chr6:39083865 2.00E-97 dispersed
HCH6g0651 HCH-Chr6:38642562 HCH6g0652 HCH-Chr6:38976200 1.50E-42 tandem
HCH6g0652 HCH-Chr6:38976200 HCH6g0653 HCH-Chr6:38999837 8.80E-85 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0652 K00799 - csv:101217848 333.183