Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0653 ATGGAAGAGCAAGTAAAGTTATTGGATTTCTGGCCCAGCATGTTTGGGATGAGGGTTAGAGTAGCCCTGGCAGAGAAGGGAATCAGCTATGAAAATGTTGAAGAGGATTTGGCCAACAAGAGTCCTTCGCTTTTGGAGATGAACCCAGTTTATAAAAAGATCCCAGTTCTCATTCACAATGGAAAACCCATTTGTGAATCTCTCATTATTGTTGAATATATTGATCAAGTTTGGAACAAGGTGACCCCTCTATTGCCATCTGATCCTTATGAGAGAGCTCAAGCCAGGTTCTGGGCTGATTTCATTGATAAGAAGCTATTTGATGCTGGAACTAAGGTTTGGTCCTCCAAGGGAAAGGAGCAAGAGGTAGGAAAGACGGAATTGATTGGAATTCTCAAGCAATTGGAACATGTTCTTGGACAAAATTCTTACTTTGGAGGTGAAAATTTGGGATTTGTAGACATTGCTTTGGTTGGATTCTCTTGTTGGTTTTATACCTACGAAAGCTGTGGAAATTTCAGCATTGAAGGTGAGTGTCCCAAGATAATGGAATGGGCAAAGAGGTGCCTTCAAAATAAGAGTGTATCAACCTCTCTCCCTCGTCCCAACAAGGTCTATGATTTTCTTCTTCAAGTAAAGCGAAAATATGGCATTGACTAA 660 40.76 MEEQVKLLDFWPSMFGMRVRVALAEKGISYENVEEDLANKSPSLLEMNPVYKKIPVLIHNGKPICESLIIVEYIDQVWNKVTPLLPSDPYERAQARFWADFIDKKLFDAGTKVWSSKGKEQEVGKTELIGILKQLEHVLGQNSYFGGENLGFVDIALVGFSCWFYTYESCGNFSIEGECPKIMEWAKRCLQNKSVSTSLPRPNKVYDFLLQVKRKYGID 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38999837 39000678 + evm.model.ptg000003l.1139 HCH6g0653 546147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0653 219 SFLD Glutathione Transferase (cytosolic) 1 216 IPR040079 -
HCH6g0653 219 Pfam Glutathione S-transferase, C-terminal domain 117 191 IPR004046 -
HCH6g0653 219 FunFam Tau class glutathione S-transferase 1 87 - -
HCH6g0653 219 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 209 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
HCH6g0653 219 Gene3D Glutaredoxin 1 87 - -
HCH6g0653 219 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
HCH6g0653 219 SUPERFAMILY GST C-terminal domain-like 77 216 IPR036282 -
HCH6g0653 219 CDD GST_C_Tau 89 211 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
HCH6g0653 219 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 216 IPR010987 -
HCH6g0653 219 SUPERFAMILY Thioredoxin-like 4 106 IPR036249 -
HCH6g0653 219 FunFam Glutathione S-transferase U20 88 219 - -
HCH6g0653 219 Gene3D - 88 219 - -
HCH6g0653 219 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
HCH6g0653 219 SFLD Main.3: Omega- and Tau-like 1 216 IPR045073 -
HCH6g0653 219 CDD GST_N_Tau 5 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0653 HCH-Chr6:38999837 HCH6g0656 HCH-Chr6:39268397 2.80E-91 dispersed
HCH6g0652 HCH-Chr6:38976200 HCH6g0653 HCH-Chr6:38999837 8.80E-85 tandem
HCH6g0653 HCH-Chr6:38999837 HCH6g0654 HCH-Chr6:39083865 5.50E-95 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0653 K00799 - csv:101217848 345.125