Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0654 ATGGCGGTCGAAGTGAAACTATTGACCACCTGGCCCAGCATGTTTGGAATGAGGGCTCAAGTAGCCTTGGCTGAGAAGGGAGTTAGCTATGAATATGTGGAAGAGGATTTGGTGAATAAGAGTCCTTTGCTTTTGGAGATGAACCCGGTTCACAAGAAGATTCCGGTTCTCATTCACAATGGAAAACCCATCAACGAATCTCTGATTATTGTTGAGTATATTGATGAAGTGTGGAAGGATAAAACGCCTCTGTTGCCGTCCGATCCTTACGAGAGAGCTCAGGCCAGATTCTGGGCTGACTTCATTGACAAAAAGCTTTATGATGCCGGGAGAAAGACATGGGCTACCAAGGGAGAGGAGCAAGAGGCGGGGACGAAGGATTTGATAGAAATTTTGAAGCAATTAGAGGAAGTTTTAGGAGAAAAGGGTTACTTTGGAGGAGAAAATTTGGGATTTTTAGATATTGCTTTGATTGGATTCTCCACCTGGTTTTATTCCTTTGAAACCCATGGAAACTTCAGTGTAGAAGCTGAGTGTCCAAAGATAAGTGCTTGGGTGAAGAGGTGTCTGCAAAAGGAGAGTGTTTCAAAGTCACTCCCTGACCCTAAGAAGGTCTATGAGTTTGTGCTTCAATTGAAGAAGATATTTGGTATTTAA 657 43.07 MAVEVKLLTTWPSMFGMRAQVALAEKGVSYEYVEEDLVNKSPLLLEMNPVHKKIPVLIHNGKPINESLIIVEYIDEVWKDKTPLLPSDPYERAQARFWADFIDKKLYDAGRKTWATKGEEQEAGTKDLIEILKQLEEVLGEKGYFGGENLGFLDIALIGFSTWFYSFETHGNFSVEAECPKISAWVKRCLQKESVSKSLPDPKKVYEFVLQLKKIFGI 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39083865 39084614 + evm.model.ptg000003l.1138 HCH6g0654 546148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0654 218 CDD GST_C_Tau 89 212 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
HCH6g0654 218 Gene3D - 88 218 - -
HCH6g0654 218 SFLD Glutathione Transferase (cytosolic) 4 215 IPR040079 -
HCH6g0654 218 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
HCH6g0654 218 SUPERFAMILY GST C-terminal domain-like 76 215 IPR036282 -
HCH6g0654 218 FunFam Glutathione S-transferase U20 88 218 - -
HCH6g0654 218 Gene3D Glutaredoxin 1 87 - -
HCH6g0654 218 SUPERFAMILY Thioredoxin-like 5 107 IPR036249 -
HCH6g0654 218 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 216 IPR010987 -
HCH6g0654 218 SFLD Main.3: Omega- and Tau-like 4 215 IPR045073 -
HCH6g0654 218 Pfam Glutathione S-transferase, C-terminal domain 116 192 IPR004046 -
HCH6g0654 218 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
HCH6g0654 218 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 209 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
HCH6g0654 218 FunFam Tau class glutathione S-transferase 1 87 - -
HCH6g0654 218 CDD GST_N_Tau 5 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0589 HCH-Chr6:34891142 HCH6g0654 HCH-Chr6:39083865 4.80E-123 dispersed
HCH6g0651 HCH-Chr6:38642562 HCH6g0654 HCH-Chr6:39083865 1.20E-39 dispersed
HCH6g0652 HCH-Chr6:38976200 HCH6g0654 HCH-Chr6:39083865 2.00E-97 dispersed
HCH6g0654 HCH-Chr6:39083865 HCH7g1512 HCH-Chr7:47684223 7.60E-44 dispersed
HCH6g0654 HCH-Chr6:39083865 HCH6g0656 HCH-Chr6:39268397 3.10E-90 proximal
HCH6g0653 HCH-Chr6:38999837 HCH6g0654 HCH-Chr6:39083865 5.50E-95 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0654 K00799 - csv:101218562 350.132