Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0671 ATGATGGTGCTAAAAATGAGTTTCCTCAAATGGGTATTATTGACTTGCTTATTGTTCTCTTTTTCTTTTTCTTTGGGTCTCAAACCCTCAAGTAAAGTCTGTGATCCAAAAGATTTATTGGCATTGAGGGGCTTTGTGAAAAGCCTCAGAAATAGCTCTCTTCTCTCTGTATGGTCCAATGAATCCAACTGCTGCAATTGGGATGGTGTTTTTTGTGGATATGATGATGGTAACACCTCTCTGACTAACAGAGTTACCAAGTTGATGCTTCCTAATATGGATCTCAAGGGAGTTCTTTCACAATCTTTGGGTGGTTTAGATCAGTTAATTTGGCTTAATCTTTCATACAATCGGCTTGAAGGTGGACTGCCAACAGAATTCTCAAGGTTCAAGCAGCTCCAAGTTTTAGATTTGAGCTATAACATGCTATCAGGACCTGTCACCGATGCCACTTCAGTACTCAAATCTGTTCGTATTCTGAATATTTCCAGTAATTCATTCACGGGATATTTGCCCCAGATTATGGAATTCCCAAATCTTGTTGTCTTCAACATAAGCAACAATTCCTTCACAGGCCAGCTCTCTTCACAGATTTTCAATTCCTCCAATCTGCTTCAGGTTTTCGACATATCACTGAACCGAATATCGGGCGATCTTCAAGGTTTGGAGTATTGTAGAAAATCTCTCAAACATTTCCGTGCAGATTATAATTTGTTTACGGGCAACCTTCCGGATTCTTTATATTCGCTGTCATCTTTGGAGTATTTCTCAATCCCTGGAAACAGCTACTTGGGCCAGTTAAGCATGGAATTAAGCAAGCTTTCTAGGCTTAAATCCTTTATAATTTTTGGAAACAAGCTTTCTGGAGGTCTTCCAAACGTGTTTGGTAATCTTTCAGAATTACAAGAATTGGTTGTACATTCTAACTTGTTCACTGGACAACTGCCTTCAACTCTGTCATTCTGCTCAAAGCTCAGTGTGTTGGATCTTAGAAACAATTCTTTAACGGGTACTATCGATCTCAATTTTTCCGGACTACCCAATCTTCACATGCTTGATTTAGCCTCTAATCACTTTCATGGATCTCTCCCAGATTCTCTATCTGATTGCCATGAATTGAGAACTCTTAGCCTTGCCAAAAACAAGTTAACTGGTCAAATTCCTCAAGGTTATGCAAAGCTCGTCTCTCTGTCATTTCTATCTCTGTCAAACAACAGTTTTGTGAACTTGGATGGTGCATTATCTGTTCTACAAAGTTGCAAAAACCTGACCACTCTTATCCTCACAAAGAATTTTCGTAATGAGGAAATTCCACAGAATGTGATTGCTTTAAACAACATCATGCTTTTGGCATTTGGGTACTGTGGCCTCAGAGGCCAAATCCCTGGTTGGTTATCTGGTTGCAAGAAACTGAGTATCCTTGATTTGTCCTGGAATCACTTAAATGGCAGCATTCCTGCTTGGATCGGCCAGCTGGAGAACTTGTTTTACCTGGACTTATCCAACAATTCTCTTACAGGCGAAATCCCAAAAAGCTTGACACAGATGAAAGCATTAATTTCCAAAAACTGCAGCTTGCTGAGTTCAACATCATCTGCTGGAATACCGCTTTTTGTAAAACGAAATCAAAGTTCGGCTGGTCTGCAATACAACCAGGCATCAAGCTTTCCACCATCTATTTACTTGAGCTACAACAGAATAAATGGAACCATTTGGCCCGAAATTGGTAGATTGAAATGGCTGCATGTCTTGGATTTGAGTAGAAATGACATTACTGGTTCTATCCCCAGTACCATTTCAGAGATGGAGAACTTGGAAATATTAGATTTGTCTAACAATGATCTTTATGGATTGATTCCTCCATCACTTAACAAGCTCACATTTTTGTCAAAATTTAGTGTGGCAAATAATCACTTGAAGGGGCCAATTCCAACTGGAGGACAATTTTTAAGCTTTCCCAGCTCAAGCTTTGAGGGTAATCCAGGACTTTGCGGAGAAATTGAGTCTCCTTGTCAATCTGTTGATAATTTAGGGAATATACCTGAAATCTCAACTGATTCAAAGAGCAAATTTGGTAGAAACAGCCTTCTCTGCCTAACAATTGGTGCAGCTGTGGCAGCCCTTCTGTTCCTTGCAGTTGTTCTACTCAAAATGTCCAGAAACGTTGTCAGAGATCCTAATAATAATTTTGATGAAGAATTTAACACGCCAGACAGGTTATCTGGAGCGCTTGGATCGTCGAAGTTGGTGCTCTTTCAGAATTCAGAATGCAATGATCTCACAGTTGCAGAGTTGTTAAAAGCCACCAGCAATTTCAACCAAGCAAACATAATTGGCTGTGGTGGATTTGGTCTGGTTTACAAAGCCAATCTTCCCAATGGGTCAAAAGCTGCAGTCAAGAGGCTTACTGGAGATTGTGGTCAGATGGAACGGGAATTCCAAGCTGAAGTAGAAGCCCTTTCTCGAGCGCAACATAAGAATCTTGTTTCTCTTCAAGGCTACTGCAAACATGGAAATGACAGGTTATTAATTTACTCCTACATGGAAAATGGAAGTTTGGACTATTGGCTTCATGAGACCGTTGATGATGGTTCAGTACTAGAATGGGATGCAAGACTCAGAATTGCGCAGGGTGCTGCTCGTGGATTGGCTTACTTGCACAAGGAATGTCAGCCCAACATAATTCACCGAGATGTAAAATCAAGCAACATACTTCTGGACGACAGGTTTGAGGCTCACTTAGCTGATTTCGGTCTTTCGAGATTACTCCGGCCTTACGATACCCATGTTACCACGGACTTGGTAGGGACTTTGGGATATATTCCTCCTGAATATAGCCAGACATTAATCGCAACCTGCAGGGGTGATGTTTATAGTTTTGGTGTGGTTCTTCTCGAACTTCTTACTGGTCGAAGACCAGTAGAGGTATGCAAAGGAAAAGCCTGCAGGAATTTGGTGTCTTGGGTGATTCAGAAGAAATCTGAAAAGAAAGAAGAGGAGATTATTTATCCTGCAATTTGGGATACCAATAACAAGAAACAGATTTTAGAGGTTCTTGGTATTACTTGTAAATGCATAGACCAAGATCCAAGGAAGAGACCTTCAATAGAAGAAGTTGCTTCATGGCTTGATGGTGTTTAG 3141 40.53 MMVLKMSFLKWVLLTCLLFSFSFSLGLKPSSKVCDPKDLLALRGFVKSLRNSSLLSVWSNESNCCNWDGVFCGYDDGNTSLTNRVTKLMLPNMDLKGVLSQSLGGLDQLIWLNLSYNRLEGGLPTEFSRFKQLQVLDLSYNMLSGPVTDATSVLKSVRILNISSNSFTGYLPQIMEFPNLVVFNISNNSFTGQLSSQIFNSSNLLQVFDISLNRISGDLQGLEYCRKSLKHFRADYNLFTGNLPDSLYSLSSLEYFSIPGNSYLGQLSMELSKLSRLKSFIIFGNKLSGGLPNVFGNLSELQELVVHSNLFTGQLPSTLSFCSKLSVLDLRNNSLTGTIDLNFSGLPNLHMLDLASNHFHGSLPDSLSDCHELRTLSLAKNKLTGQIPQGYAKLVSLSFLSLSNNSFVNLDGALSVLQSCKNLTTLILTKNFRNEEIPQNVIALNNIMLLAFGYCGLRGQIPGWLSGCKKLSILDLSWNHLNGSIPAWIGQLENLFYLDLSNNSLTGEIPKSLTQMKALISKNCSLLSSTSSAGIPLFVKRNQSSAGLQYNQASSFPPSIYLSYNRINGTIWPEIGRLKWLHVLDLSRNDITGSIPSTISEMENLEILDLSNNDLYGLIPPSLNKLTFLSKFSVANNHLKGPIPTGGQFLSFPSSSFEGNPGLCGEIESPCQSVDNLGNIPEISTDSKSKFGRNSLLCLTIGAAVAALLFLAVVLLKMSRNVVRDPNNNFDEEFNTPDRLSGALGSSKLVLFQNSECNDLTVAELLKATSNFNQANIIGCGGFGLVYKANLPNGSKAAVKRLTGDCGQMEREFQAEVEALSRAQHKNLVSLQGYCKHGNDRLLIYSYMENGSLDYWLHETVDDGSVLEWDARLRIAQGAARGLAYLHKECQPNIIHRDVKSSNILLDDRFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQTLIATCRGDVYSFGVVLLELLTGRRPVEVCKGKACRNLVSWVIQKKSEKKEEEIIYPAIWDTNNKKQILEVLGITCKCIDQDPRKRPSIEEVASWLDGV 1046
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39742926 39746066 - evm.model.ptg000003l.1121 HCH6g0671 546165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0671 1046 ProSitePatterns Serine/Threonine protein kinases active-site signature. 894 906 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0671 1046 Pfam Protein kinase domain 773 1040 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0671 1046 ProSitePatterns Protein kinases ATP-binding region signature. 778 800 IPR017441 GO:0005524(InterPro)
HCH6g0671 1046 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 244 339 - -
HCH6g0671 1046 Gene3D Phosphorylase Kinase; domain 1 741 847 - -
HCH6g0671 1046 FunFam Phytosulfokine receptor 1 735 847 - -
HCH6g0671 1046 SMART serkin_6 772 1043 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0671 1046 CDD STKc_IRAK 778 1045 - -
HCH6g0671 1046 FunFam Leucine-rich repeat receptor-like protein kinase 848 1046 - -
HCH6g0671 1046 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
HCH6g0671 1046 SUPERFAMILY L domain-like 239 650 - -
HCH6g0671 1046 Gene3D Transferase(Phosphotransferase) domain 1 848 1045 - -
HCH6g0671 1046 PRINTS Leucine-rich repeat signature 495 508 - -
HCH6g0671 1046 PRINTS Leucine-rich repeat signature 602 615 - -
HCH6g0671 1046 Gene3D Ribonuclease Inhibitor 415 537 IPR032675 -
HCH6g0671 1046 SUPERFAMILY L domain-like 34 313 - -
HCH6g0671 1046 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 19 1045 IPR050647 -
HCH6g0671 1046 FunFam Leucine-rich repeat receptor-like kinase 38 157 - -
HCH6g0671 1046 SMART LRR_typ_2 492 516 IPR003591 -
HCH6g0671 1046 SMART LRR_typ_2 106 129 IPR003591 -
HCH6g0671 1046 SMART LRR_typ_2 394 417 IPR003591 -
HCH6g0671 1046 SMART LRR_typ_2 346 370 IPR003591 -
HCH6g0671 1046 SMART LRR_typ_2 177 201 IPR003591 -
HCH6g0671 1046 SMART LRR_typ_2 298 322 IPR003591 -
HCH6g0671 1046 SMART LRR_typ_2 602 626 IPR003591 -
HCH6g0671 1046 ProSiteProfiles Leucine-rich repeat profile. 604 627 IPR001611 GO:0005515(InterPro)
HCH6g0671 1046 Gene3D Ribonuclease Inhibitor 560 671 IPR032675 -
HCH6g0671 1046 Pfam Leucine rich repeat 84 143 IPR001611 GO:0005515(InterPro)
HCH6g0671 1046 Pfam Leucine rich repeat 300 359 IPR001611 GO:0005515(InterPro)
HCH6g0671 1046 Gene3D Ribonuclease Inhibitor 154 411 IPR032675 -
HCH6g0671 1046 Pfam Leucine Rich Repeat 494 515 IPR001611 GO:0005515(InterPro)
HCH6g0671 1046 Pfam Leucine Rich Repeat 604 626 IPR001611 GO:0005515(InterPro)
HCH6g0671 1046 Pfam Leucine Rich Repeat 470 492 IPR001611 GO:0005515(InterPro)
HCH6g0671 1046 Pfam Leucine Rich Repeat 581 601 IPR001611 GO:0005515(InterPro)
HCH6g0671 1046 ProSiteProfiles Protein kinase domain profile. 772 1043 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0671 1046 FunFam Tyrosine-sulfated glycopeptide receptor 1 343 676 - -
HCH6g0671 1046 SUPERFAMILY Protein kinase-like (PK-like) 754 1043 IPR011009 -
HCH6g0671 1046 Gene3D Ribonuclease Inhibitor 37 153 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0247 HCH-Chr13:1645467 HCH6g0671 HCH-Chr6:39742926 4.30E-61 dispersed
HCH4g1243 HCH-Chr4:8488622 HCH6g0671 HCH-Chr6:39742926 5.30E-122 dispersed
HCH5g1105 HCH-Chr5:27329209 HCH6g0671 HCH-Chr6:39742926 3.30E-60 dispersed
HCH6g0671 HCH-Chr6:39742926 HCH7g0557 HCH-Chr7:4445558 2.00E-70 dispersed
HCH11g1206 HCH-Chr11:44365952 HCH6g0671 HCH-Chr6:39742926 9.60E-78 transposed
HCH1g0107 HCH-Chr1:8283826 HCH6g0671 HCH-Chr6:39742926 3.40E-06 transposed
HCH14g0945 HCH-Chr14:36980077 HCH6g0671 HCH-Chr6:39742926 6.70E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81567 PF00069 Pkinase 5.80E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0671 K27626 - rcu:8265318 1372.84