Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0679 ATGGGTTGTGTTTGTTGTAAGCCTTCTGCTATAGAAGATATTAAGGAGAGCCCGAGAGAGAGGTCAGCGAGTAAGGCGTCGTCGGACCTACGTGTGTCGAGAGTGACTTCGTCATCAAGGGAAGAAGCTTATAGATCTAAAGATCATGCTGATAGTAATGATGGGAGAGTGATGTTGATTGACAAACAAGTGAATGGGGCGGCTCGGTTACAGGGTGAGAATGTTGAGAGGAAGAGGGAGAAGATGGAGTATATGGGTGCTCAGCATCCTGGAATGGGTAGAATGCCAAAGGCAGCAGAGGGGGACCATGTTGCTGCAGGATGGCCACCCTGGTTAGCTGCTGTTGCTGGAGAGGCAATCAGAGGGTGGTTACCCCGACGGGCTGATTCGTTCGAGAAATTGGATAAAATTGGCCAGGGAACTTATAGTAATGTGTATAGGGCTCGTGACCTTGACCAGAAGAAAATTGTTGCTTTGAAGAAAGTAAGGTTTGACAACCTGGAACCTGAGAGTGTCCGCTTTATGGCTAGGGAAATTCACATTTTGCGTAGACTTGATCATCCAAATGTGATCAAGCTGGAAGGTCTGGTTACATCAAGGATGTCTTGCAGCCTTTATCTTGTTTTTGAGTACATGGAACATGACTTGGCAGGACTAGCTTCACACCCTGGTCTGAAGTTTACAGAGGCACAGGTCAAATGTTACATGCAGCAACTATTACGTGGACTTGATCATTGCCACAGTCATGGAGTTCTTCACCGTGATATAAAGGGTTCCAACCTTTTAATTGACAATAATGGCATCTTAAAAATTGCAGACTTTGGTCTAGCAAGTTTGTTTGATGTCCATCAGAGTCAACCACTAACAAGCCGTGTCGTAACTCTTTGGTATCGACCACCTGAGCTTTTACTTGGAGCCACTTATTATGGTACAGCTGTAGATTTATGGAGCACTGGCTGCATACTTGCTGAGTTGTATGCTGGCAAGCCCATTATGCCAGGAAGAACAGAGGTGGAACAGCTACATAAAATATTTAAGCTCTGTGGCTCACCTTCAGAGGATTATTGGAGAAAATCAAGGTTGCCACATGCGACTATATTTAAGCCCCAACAGCCCTATAGACGCTGTGTTGCAGAAACATTTAAGGATTTCCCCGCACCGGCTTTAGCTCTCATTGAAACACTACTCGGTATAGATCCTGCTGATCGTGGCTCTGCAGCGCATGCCCTTAAAAGCGATTTCTTTTCAACAAAGCCACTTCCTTGCGATCCTTCTAGCTTGCCGAAGTATCCTCCCAGCAAAGAATTTGATGCGAAGATAAGGGATGAGGAAGCTAGAAGACAAGCAGCAGCAGGAGGCAAAGGACACAGACTTGACCACGAAAAAAGAGGTAGAGAGTCTCGAGCTGTCCCTGCACCTGATGCCAATGCTGAGTTAGCCTCGTCAATGCAGAAAAGACAAGTTCAGCCCAATCCAAAGAGCCGGAGTGAGAAATTCAATCCACATCCAGAAGAAGCTTCTGGCTTTCCAATTGATCCACCTAGACCTTCACAAGCAGCAGACATGAGAACAGATTCTCAGGGGCGTTATGCTAAGAAAGCCTCACATTCGGGGCCACTTGCTCAGCGGGCTGCTTGGGCTAAGGCTAGCAAGAACCTAGAAGATGCTCCAAAAATCTCAACGGGTGGTGATTTGTCTACAACATCAGGGTTAGTAACATCTAGAAGGAGTACGATGGTTGAAGATTGCAGGGAGAAGCCTGACTCTTCACAAGGAGTCCAAAAACTAATTGGCAGGTTTCCTGGCTCCTTTAAAGAATCCTCGGAGTCATCAATGTTGCAGGATCAGAAGTTTTCAAATCACAGTATTGCAGGTTCTCATGACAAAGACGAAAGGACCAGCACCAAAGATCCGATACTTGTGGGTTATGGCTCAAAGGGTCATAAGATTCATTACTCCGGTCCATTGCTGGTTCCTTCTGGAAATATGGACCAAATGTTAAAGGACCATGATCGCCATATACAAGAAGCTGTAAGACGAGCTCGACTCGACAAGGCTAAGGTACGGAAGGTTCAAGGTGATGGAAAACAGATTTCAACCAATTCATTATTTGTCTCTGGTCGTTAA 2127 45.79 MGCVCCKPSAIEDIKESPRERSASKASSDLRVSRVTSSSREEAYRSKDHADSNDGRVMLIDKQVNGAARLQGENVERKREKMEYMGAQHPGMGRMPKAAEGDHVAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASLFDVHQSQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVAETFKDFPAPALALIETLLGIDPADRGSAAHALKSDFFSTKPLPCDPSSLPKYPPSKEFDAKIRDEEARRQAAAGGKGHRLDHEKRGRESRAVPAPDANAELASSMQKRQVQPNPKSRSEKFNPHPEEASGFPIDPPRPSQAADMRTDSQGRYAKKASHSGPLAQRAAWAKASKNLEDAPKISTGGDLSTTSGLVTSRRSTMVEDCREKPDSSQGVQKLIGRFPGSFKESSESSMLQDQKFSNHSIAGSHDKDERTSTKDPILVGYGSKGHKIHYSGPLLVPSGNMDQMLKDHDRHIQEAVRRARLDKAKVRKVQGDGKQISTNSLFVSGR 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 39966838 39975352 - evm.model.ptg000003l.1113 HCH6g0679 546173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0679 708 MobiDBLite consensus disorder prediction 555 636 - -
HCH6g0679 708 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0679 708 MobiDBLite consensus disorder prediction 445 469 - -
HCH6g0679 708 MobiDBLite consensus disorder prediction 604 621 - -
HCH6g0679 708 SUPERFAMILY Protein kinase-like (PK-like) 125 423 IPR011009 -
HCH6g0679 708 FunFam probable serine/threonine-protein kinase At1g54610 118 213 - -
HCH6g0679 708 MobiDBLite consensus disorder prediction 14 54 - -
HCH6g0679 708 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
HCH6g0679 708 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0679 708 MobiDBLite consensus disorder prediction 561 576 - -
HCH6g0679 708 PANTHER CELL DIVISION PROTEIN KINASE 130 415 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
HCH6g0679 708 MobiDBLite consensus disorder prediction 480 496 - -
HCH6g0679 708 MobiDBLite consensus disorder prediction 35 54 - -
HCH6g0679 708 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
HCH6g0679 708 FunFam probable serine/threonine-protein kinase At1g54610 214 455 - -
HCH6g0679 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0679 708 MobiDBLite consensus disorder prediction 445 540 - -
HCH6g0679 708 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524(InterPro)
HCH6g0679 708 MobiDBLite consensus disorder prediction 622 636 - -
HCH6g0679 708 SMART serkin_6 131 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0679 708 CDD STKc_CDK9_like 131 415 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0833 HCH-Chr2:51837114 HCH6g0679 HCH-Chr6:39966838 2.70E-207 dispersed
HCH3g0634 HCH-Chr3:4412700 HCH6g0679 HCH-Chr6:39966838 1.60E-97 dispersed
HCH4g1876 HCH-Chr4:50115861 HCH6g0679 HCH-Chr6:39966838 4.70E-26 dispersed
HCH6g0679 HCH-Chr6:39966838 HCH7g1131 HCH-Chr7:44079946 6.60E-182 dispersed
HCH12g1497 HCH-Chr12:40968015 HCH6g0679 HCH-Chr6:39966838 3.40E-120 transposed
HCH12g1568 HCH-Chr12:42284330 HCH6g0679 HCH-Chr6:39966838 7.50E-188 transposed
HCH1g0137 HCH-Chr1:10363276 HCH6g0679 HCH-Chr6:39966838 1.20E-199 transposed
HCH2g0832 HCH-Chr2:51828129 HCH6g0679 HCH-Chr6:39966838 7.60E-188 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81568 PF00069 Pkinase 5.20E-69 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0679 - - - 0.0