Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0686 ATGCAGGCGGCGGCTATGGTTTCTAGAACTGTGATTCTCTGGGAATTGCTTTTCGTCATATTTCTTAGTAAAGGGATTGTGAAGGGGATTTGTGGTGATGGAGTTGTAGGGGGTTGGTTTGATGCTCATGCAACTTTCTATGGAGCTGATCAAAACCCTACTACTCTGGGAGGAGCATGTGGTTACGACAACACTTTTCACGCCGGTTTCGGAGTAACGACGGCGGCAGTGAGCGGTGTACTTTTCAGAGGAGGAGAGGCATGTGGAGCTTGCTTCCAAGTAATGTGCAATTTTAACGTCGACCCAAAATGGTGCAGGAGACACCGTCCGGTGGCGGTAACCGCCACAAATTTCTGCCCTTCCAATAACAATGGAGGCTGGTGCGACCCTCCCCGCTCTCATTTCGACATGTCCATGCCTGCTTTTCTTACCATTGCTCGACAAGGCAATGAAGGCATTATCCCTGTTCTTTTTAAGAGGGTGAGTTGTAGAAGGAAGGGAGGAGTCCGATTCACATTAAAAGGGCAATCAAGCTTCACAATGGTTATGATATCAAACGTGGGCGGCAGCGGCGACGTGAAGGCTGCATGGATAAAGGGTTCAAGAACGAGAATGTGGGTGGCGATGCGGCGGAACTGGGGAGCTAACTGGCAAGCCACCGTCGACCTCCGAGACCAAAGAATGTCGTTTAAGCTCACTCTTGCTGATGAAACGACATTGGAGTTTGTTAATGTGGTTCCTTCCTCTTGGAGATTTGGTCAGACATTTTCTTCCAGGATTCAGTTCTCTTAA 792 48.86 MQAAAMVSRTVILWELLFVIFLSKGIVKGICGDGVVGGWFDAHATFYGADQNPTTLGGACGYDNTFHAGFGVTTAAVSGVLFRGGEACGACFQVMCNFNVDPKWCRRHRPVAVTATNFCPSNNNGGWCDPPRSHFDMSMPAFLTIARQGNEGIIPVLFKRVSCRRKGGVRFTLKGQSSFTMVMISNVGGSGDVKAAWIKGSRTRMWVAMRRNWGANWQATVDLRDQRMSFKLTLADETTLEFVNVVPSSWRFGQTFSSRIQFS 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40159949 40162612 + evm.model.ptg000003l.1106 HCH6g0686 546180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0686 263 Pfam Expansin C-terminal domain 169 247 IPR007117 -
HCH6g0686 263 CDD DPBB_EXPA_N 38 163 - -
HCH6g0686 263 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576(InterPro)
HCH6g0686 263 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576(InterPro)
HCH6g0686 263 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576(InterPro)
HCH6g0686 263 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576(InterPro)
HCH6g0686 263 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576(InterPro)
HCH6g0686 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576(InterPro)
HCH6g0686 263 SUPERFAMILY Barwin-like endoglucanases 17 186 IPR036908 -
HCH6g0686 263 SUPERFAMILY PHL pollen allergen 165 258 IPR036749 -
HCH6g0686 263 Pfam Lytic transglycolase 74 157 IPR009009 -
HCH6g0686 263 Gene3D - 33 164 IPR036908 -
HCH6g0686 263 SMART dpbb_1 74 158 IPR007112 -
HCH6g0686 263 PRINTS Expansin signature 111 121 IPR002963 GO:0009664(InterPro)
HCH6g0686 263 PRINTS Expansin signature 125 142 IPR002963 GO:0009664(InterPro)
HCH6g0686 263 PRINTS Expansin signature 69 83 IPR002963 GO:0009664(InterPro)
HCH6g0686 263 PRINTS Expansin signature 215 236 IPR002963 GO:0009664(InterPro)
HCH6g0686 263 PRINTS Expansin signature 244 260 IPR002963 GO:0009664(InterPro)
HCH6g0686 263 PRINTS Expansin signature 179 200 IPR002963 GO:0009664(InterPro)
HCH6g0686 263 PRINTS Expansin signature 98 109 IPR002963 GO:0009664(InterPro)
HCH6g0686 263 PRINTS Expansin signature 167 179 IPR002963 GO:0009664(InterPro)
HCH6g0686 263 Gene3D - 168 263 IPR036749 -
HCH6g0686 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 258 IPR007117 -
HCH6g0686 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 168 IPR007112 -
HCH6g0686 263 PANTHER EXPANSIN-A15 18 258 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0686 HCH-Chr6:40159949 HCH9g0677 HCH-Chr9:4503623 2.10E-64 dispersed
HCH2g0817 HCH-Chr2:51732707 HCH6g0686 HCH-Chr6:40159949 2.20E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0686 - - - 0.0