Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0711 ATGGCAGCCACCGCCAGCTCCACCACTCTTCTCCGACCAACCCCTTTTCTCGGTCAGACCAGAGCCTCCCTTCAGAACCCTCTCAGAGATGTTGTTTCCATGGGAACTGGGAAATATACCATGATTAATGGTGGGTTTTATTTGATACAGGGAAATGATCTCTGGTATGGACCAGACAGAGTCAAGTATTTGGGGCCGTTTTCAGCTCAGACTCCTTCCTACCTCACCGGAGAGTTTCCCGGCGATTACGGATGGGACACTGCTGGATTGTCTGCTGATCCTGAGGCCTTCGCCAAAAACAGAGCTCTTGAGGTGATTCATGGGAGATGGGCAATGCTAGGAGCCTTTGGTTGCATAACTCCAGAAGTACTTGAAAAATGGTTGAAAGTTGACTTCAAAGAGCCAGTTTGGTTCAAAGCTGGCTCCCAAATCTTCACTGAAGGTGGCCTTGACTACTTAGGCAACCCCAACTTAGTCCACGCCCAAAGCATCCTTGCGGTCCTTGGCTCCCAAGTCATTCTCATGGGTCTTGTCGAAAGCTTCCGCATCAACGGCCTTGACGGCGTCGGAGAAGGCAACGACCTCTACCCCGGGGGACAATACTTCGACCCGCTCGGACTCGCTGATGACCCGGTAACTTTTGCGGAATTGAAGGTGAAGGAGATAAAGAATGGGCGATTGGCAATGTTCTCCATGTTTGGTTTCTTTGTTCAAGCTATTGTAACAGGAAAAGGGCCACTTGAGAATCTTTTGGACCATTTGGATAACCCTGTGGCCAATAATGCTTGGGTTTATGCCACCAAATTTGCTCCCGGATCATAA 822 49.64 MAATASSTTLLRPTPFLGQTRASLQNPLRDVVSMGTGKYTMINGGFYLIQGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKVDFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGSQVILMGLVESFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGS 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40515738 40517234 - evm.model.ptg000003l.1081 HCH6g0711 546205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0711 273 Pfam Chlorophyll A-B binding protein 72 240 IPR022796 -
HCH6g0711 273 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 51 272 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
HCH6g0711 273 FunFam Chlorophyll a-b binding protein, chloroplastic 62 266 - -
HCH6g0711 273 SUPERFAMILY Chlorophyll a-b binding protein 54 270 - -
HCH6g0711 273 Gene3D Chlorophyll a/b binding protein domain 62 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0711 HCH-Chr6:40515738 HCH7g0335 HCH-Chr7:2374643 4.20E-100 dispersed
HCH12g0020 HCH-Chr12:146415 HCH6g0711 HCH-Chr6:40515738 7.40E-51 transposed
HCH12g1114 HCH-Chr12:8672768 HCH6g0711 HCH-Chr6:40515738 4.40E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0711 K08914 - csv:101207278 511.531