Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g0713 | ATGGCTACCCGCCGTGACACTTCACGTGCTTCCGCTTCGGCCTCATTTGACACCACGCACGATGACGATCGTCGTGTCAATTCTTCTGACACTGAAGAAGGAGGAGAAGAAGAAGAAGAAAAAGATGACGATGACGACGAGGAAGAAGAAGAAAATTCTCGAGGAGGGTTCTGCCGCAATCTATACTATACATGTGGATCCAGCAGGAAAGAGTGGTCACTGGGACCGGTATTGGATCCAAGAGCCAAATGGGTTAGAGAATGGAACAGGATTTTCCTTCTGGTGTGTGCTGCTGGGCTATTTGTAGACCCTCTCTTCCTCTACACCTTGTCGGTAAGTGATACCGCCATGTGTTTATTCGTCGATGGGTGGTTGGCTATAACCGTGACGGTGCTCCGGTGTATGACGGATGCATTGCACGTATGGAACATGTGGTTGCAAGTGAAAACGGCAAAGAGATCTCCGTTCGGAGGCGGTATGGGAGGCGCTAGTGCCGGAGATAGAGGGCTGAGAGACACCAGCCCTCGCTCGGTTGCTCTTCGTTATTTCAAGTCCAAGAAGGGTTTCTTCTTTGATCTCTTTGTTATTCTGCCTCTTCCTCAGGTATTATTATGGGTAGTAATACCATCGATAATGAAAGAAGGGTCAGTGACATTGGTGATGACAGTGTTGTTAATAATATTTCTGTTTCAATATTTACCAAAACTCTACCACTCAGTCTGCCTTTTGCGACGCTTGCAAAACCTCTCAGGCTACATCTTTGGCACTGTTTGGTGGGGCATTGCTCTCAATCTCATTGCATACTTCGTTGCTGCCCATGCGGCAGGAGCGTGCTGGTACCTACTGGGGTTACAAAGAGCAACAAAATGCCTAAAAGAAGAATGCAGGGCAACAAGCAGCTGTACTGGTTTGAGATTATTGTCGTGTAAAGAACCAATATTTTATGGAATGACAAAAATGGGGAAAGATAGAGCCAGAGTTGAATGGGCAAAGAATAACCATCCAAGATCCATTTGCTTACAAACTTCTGATAACTATGATTATGGAGCTTATAAATGGACTGTTCAGCTTGTTTCCAATGAGAGTCGCTTGGAGAAGATTCTTTTTCCCATCTTTTGGGGCCTCATGACTCTCAGTACCTTTGGCAACTTGGAGAGCACCACAGAATGGCTTGAAGTAGTGTTCAATATCATTGTTTTGACAAGTGGACTCCTTTTGGTGACCATGTTGATTGGAAATATCAAGGTGTTTCTTCATGCAACCACATCAAAGAAACAGGCAATGCAATTGAAGATGAGGAACCTAGAATGGTGGATGAGGAAGAGACACTTACCGCAGGGCTTCAGGCAGCGTGTTCGCCACTACGAGCGGCAGCGATGGGCGGCAATGCGTGGCGTCGACGAGTGCCAGATGATCAGAAACCTACCAGAAGGCCTTCGCAGAGACATCAAGTATCATCTTTGCTTGGACCTTGTTAGACAGGTTCCCTTGTTTCAGCATATGGATGATCTTGTTCTTGAGAACATCTGTGATCGCGTCAAGTCCCTCATCTTCACCAAGGGTGAAACTATAACAAGAGAAGGAGACCCTGTTCAAAGAATGCTCTTTGTCGTACGAGGCCATCTCCAAAGCAGTCAAGTCCTCCGCGACGGCGTGAAAAGTTGCTGTATGTTAGGCCCCGGCAACTTCAGCGGCGACGAGCTTCTTTCATGGTGTCTCCGGCGTCCATTCATCGAGCGCCTACCGCCTTCCTCCTGCACTCTAATCACTCTCGAAACTACGGAGGCATTTGGATTAGAAGCAGAAGATGTGAAATACGTGACACAGCATTTCCGTTATACGTTTGTGAACGAGAAAGTCAAGAGAAGCGCCAGATACTATTCACCCGGATGGAGAACTTGGGCAGCGGTGGCGATTCAGCTTGCATGGCGGCGGTACCGACACCGCCTTACACTGACATCGCTGTCTTTCATTCGGCCACGGCGGCCGCTGTCAAGATGCTCTTCGTTGGGAGAAGATCGATTGAGGCTGTATACGGCTTTGCTTACTTCACCGAAGCCAAGTCACGATCAGTTTGATTTCTGA | 2085 | 47.67 | MATRRDTSRASASASFDTTHDDDRRVNSSDTEEGGEEEEEKDDDDDEEEEENSRGGFCRNLYYTCGSSRKEWSLGPVLDPRAKWVREWNRIFLLVCAAGLFVDPLFLYTLSVSDTAMCLFVDGWLAITVTVLRCMTDALHVWNMWLQVKTAKRSPFGGGMGGASAGDRGLRDTSPRSVALRYFKSKKGFFFDLFVILPLPQVLLWVVIPSIMKEGSVTLVMTVLLIIFLFQYLPKLYHSVCLLRRLQNLSGYIFGTVWWGIALNLIAYFVAAHAAGACWYLLGLQRATKCLKEECRATSSCTGLRLLSCKEPIFYGMTKMGKDRARVEWAKNNHPRSICLQTSDNYDYGAYKWTVQLVSNESRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNLEWWMRKRHLPQGFRQRVRHYERQRWAAMRGVDECQMIRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSCTLITLETTEAFGLEAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPSHDQFDF | 694 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 40557755 | 40563245 | + | evm.model.ptg000003l.1079 | HCH6g0713 | 546207 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g0713 | 694 | Gene3D | Jelly Rolls | 495 | 613 | IPR014710 | - | |
HCH6g0713 | 694 | Pfam | Cyclic nucleotide-binding domain | 518 | 607 | IPR000595 | - | |
HCH6g0713 | 694 | CDD | CAP_ED | 497 | 603 | IPR000595 | - | |
HCH6g0713 | 694 | MobiDBLite | consensus disorder prediction | 32 | 51 | - | - | |
HCH6g0713 | 694 | FunFam | cyclic nucleotide-gated ion channel 4 | 495 | 613 | - | - | |
HCH6g0713 | 694 | SUPERFAMILY | Voltage-gated potassium channels | 80 | 418 | - | - | |
HCH6g0713 | 694 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 65 | 651 | - | - | |
HCH6g0713 | 694 | SUPERFAMILY | cAMP-binding domain-like | 423 | 611 | IPR018490 | - | |
HCH6g0713 | 694 | Pfam | Ion transport protein | 88 | 414 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH6g0713 | 694 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
HCH6g0713 | 694 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 497 | 576 | IPR000595 | - | |
HCH6g0713 | 694 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
HCH6g0713 | 694 | MobiDBLite | consensus disorder prediction | 16 | 31 | - | - | |
HCH6g0713 | 694 | Gene3D | Helix hairpin bin | 422 | 488 | - | - | |
HCH6g0713 | 694 | FunFam | Cyclic nucleotide-gated ion channel 1 | 424 | 488 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0697 | HCH-Chr13:5689475 | HCH6g0713 | HCH-Chr6:40557755 | 5.10E-182 | dispersed | |
HCH6g0713 | HCH-Chr6:40557755 | HCH8g0989 | HCH-Chr8:45991506 | 5.10E-102 | dispersed | |
HCH6g0713 | HCH-Chr6:40557755 | HCH2g1187 | HCH-Chr2:54377065 | 1.10E-107 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH6g0713 | K05391 | - | csv:101207531 | 1119.38 |