Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0713 ATGGCTACCCGCCGTGACACTTCACGTGCTTCCGCTTCGGCCTCATTTGACACCACGCACGATGACGATCGTCGTGTCAATTCTTCTGACACTGAAGAAGGAGGAGAAGAAGAAGAAGAAAAAGATGACGATGACGACGAGGAAGAAGAAGAAAATTCTCGAGGAGGGTTCTGCCGCAATCTATACTATACATGTGGATCCAGCAGGAAAGAGTGGTCACTGGGACCGGTATTGGATCCAAGAGCCAAATGGGTTAGAGAATGGAACAGGATTTTCCTTCTGGTGTGTGCTGCTGGGCTATTTGTAGACCCTCTCTTCCTCTACACCTTGTCGGTAAGTGATACCGCCATGTGTTTATTCGTCGATGGGTGGTTGGCTATAACCGTGACGGTGCTCCGGTGTATGACGGATGCATTGCACGTATGGAACATGTGGTTGCAAGTGAAAACGGCAAAGAGATCTCCGTTCGGAGGCGGTATGGGAGGCGCTAGTGCCGGAGATAGAGGGCTGAGAGACACCAGCCCTCGCTCGGTTGCTCTTCGTTATTTCAAGTCCAAGAAGGGTTTCTTCTTTGATCTCTTTGTTATTCTGCCTCTTCCTCAGGTATTATTATGGGTAGTAATACCATCGATAATGAAAGAAGGGTCAGTGACATTGGTGATGACAGTGTTGTTAATAATATTTCTGTTTCAATATTTACCAAAACTCTACCACTCAGTCTGCCTTTTGCGACGCTTGCAAAACCTCTCAGGCTACATCTTTGGCACTGTTTGGTGGGGCATTGCTCTCAATCTCATTGCATACTTCGTTGCTGCCCATGCGGCAGGAGCGTGCTGGTACCTACTGGGGTTACAAAGAGCAACAAAATGCCTAAAAGAAGAATGCAGGGCAACAAGCAGCTGTACTGGTTTGAGATTATTGTCGTGTAAAGAACCAATATTTTATGGAATGACAAAAATGGGGAAAGATAGAGCCAGAGTTGAATGGGCAAAGAATAACCATCCAAGATCCATTTGCTTACAAACTTCTGATAACTATGATTATGGAGCTTATAAATGGACTGTTCAGCTTGTTTCCAATGAGAGTCGCTTGGAGAAGATTCTTTTTCCCATCTTTTGGGGCCTCATGACTCTCAGTACCTTTGGCAACTTGGAGAGCACCACAGAATGGCTTGAAGTAGTGTTCAATATCATTGTTTTGACAAGTGGACTCCTTTTGGTGACCATGTTGATTGGAAATATCAAGGTGTTTCTTCATGCAACCACATCAAAGAAACAGGCAATGCAATTGAAGATGAGGAACCTAGAATGGTGGATGAGGAAGAGACACTTACCGCAGGGCTTCAGGCAGCGTGTTCGCCACTACGAGCGGCAGCGATGGGCGGCAATGCGTGGCGTCGACGAGTGCCAGATGATCAGAAACCTACCAGAAGGCCTTCGCAGAGACATCAAGTATCATCTTTGCTTGGACCTTGTTAGACAGGTTCCCTTGTTTCAGCATATGGATGATCTTGTTCTTGAGAACATCTGTGATCGCGTCAAGTCCCTCATCTTCACCAAGGGTGAAACTATAACAAGAGAAGGAGACCCTGTTCAAAGAATGCTCTTTGTCGTACGAGGCCATCTCCAAAGCAGTCAAGTCCTCCGCGACGGCGTGAAAAGTTGCTGTATGTTAGGCCCCGGCAACTTCAGCGGCGACGAGCTTCTTTCATGGTGTCTCCGGCGTCCATTCATCGAGCGCCTACCGCCTTCCTCCTGCACTCTAATCACTCTCGAAACTACGGAGGCATTTGGATTAGAAGCAGAAGATGTGAAATACGTGACACAGCATTTCCGTTATACGTTTGTGAACGAGAAAGTCAAGAGAAGCGCCAGATACTATTCACCCGGATGGAGAACTTGGGCAGCGGTGGCGATTCAGCTTGCATGGCGGCGGTACCGACACCGCCTTACACTGACATCGCTGTCTTTCATTCGGCCACGGCGGCCGCTGTCAAGATGCTCTTCGTTGGGAGAAGATCGATTGAGGCTGTATACGGCTTTGCTTACTTCACCGAAGCCAAGTCACGATCAGTTTGATTTCTGA 2085 47.67 MATRRDTSRASASASFDTTHDDDRRVNSSDTEEGGEEEEEKDDDDDEEEEENSRGGFCRNLYYTCGSSRKEWSLGPVLDPRAKWVREWNRIFLLVCAAGLFVDPLFLYTLSVSDTAMCLFVDGWLAITVTVLRCMTDALHVWNMWLQVKTAKRSPFGGGMGGASAGDRGLRDTSPRSVALRYFKSKKGFFFDLFVILPLPQVLLWVVIPSIMKEGSVTLVMTVLLIIFLFQYLPKLYHSVCLLRRLQNLSGYIFGTVWWGIALNLIAYFVAAHAAGACWYLLGLQRATKCLKEECRATSSCTGLRLLSCKEPIFYGMTKMGKDRARVEWAKNNHPRSICLQTSDNYDYGAYKWTVQLVSNESRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNLEWWMRKRHLPQGFRQRVRHYERQRWAAMRGVDECQMIRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSCTLITLETTEAFGLEAEDVKYVTQHFRYTFVNEKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPSHDQFDF 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40557755 40563245 + evm.model.ptg000003l.1079 HCH6g0713 546207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0713 694 Gene3D Jelly Rolls 495 613 IPR014710 -
HCH6g0713 694 Pfam Cyclic nucleotide-binding domain 518 607 IPR000595 -
HCH6g0713 694 CDD CAP_ED 497 603 IPR000595 -
HCH6g0713 694 MobiDBLite consensus disorder prediction 32 51 - -
HCH6g0713 694 FunFam cyclic nucleotide-gated ion channel 4 495 613 - -
HCH6g0713 694 SUPERFAMILY Voltage-gated potassium channels 80 418 - -
HCH6g0713 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 65 651 - -
HCH6g0713 694 SUPERFAMILY cAMP-binding domain-like 423 611 IPR018490 -
HCH6g0713 694 Pfam Ion transport protein 88 414 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH6g0713 694 MobiDBLite consensus disorder prediction 1 15 - -
HCH6g0713 694 ProSiteProfiles cAMP/cGMP binding motif profile. 497 576 IPR000595 -
HCH6g0713 694 MobiDBLite consensus disorder prediction 1 54 - -
HCH6g0713 694 MobiDBLite consensus disorder prediction 16 31 - -
HCH6g0713 694 Gene3D Helix hairpin bin 422 488 - -
HCH6g0713 694 FunFam Cyclic nucleotide-gated ion channel 1 424 488 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0697 HCH-Chr13:5689475 HCH6g0713 HCH-Chr6:40557755 5.10E-182 dispersed
HCH6g0713 HCH-Chr6:40557755 HCH8g0989 HCH-Chr8:45991506 5.10E-102 dispersed
HCH6g0713 HCH-Chr6:40557755 HCH2g1187 HCH-Chr2:54377065 1.10E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0713 K05391 - csv:101207531 1119.38