Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0716 ATGAAACTTATTATCTTTTTCTTGGGCTTTCTTCTCTTGGCAATGAAAGCTGAGCCTGAAGCAGATGATTTCTTAACTCATTCCCAGTCTTTACTTGATGGGCCTGATCACAACACTTTGATCTCTAAAAATGGGATTTTTGAATTGGGTTTCTTCAGTCCTGGACTTTCCAAGAATCGTTACTTGGGAATTTGGTATAAGAATCTATCACTGCAAACTTACGTTTGGGTTGCAAATCGGGACAACCCCATTAACGATTCCTCTGGCATTTTGGTAATAAATGCTACTGGTCATATCATGCTTCTAAGACATGATGCAGCTGTTGTTTGGTCTGCTAGGTTACTGAGGAAAGTTCTCAATGCAAAGCTTCAGCTTTTAGACACTGGAAATCTTGTTTTGAGAGATGGAAACGATGCTGATTCAGAGAATTATATGTGGCAAAGCTTTGATTATCCTACTGATTCGTTTTTGCCGGGCATGAAGCTTGGTTGGGACCTGAAGAATAGGATAAATCGAATTCTATCGGCTTGGAAGAATCCCGATGATCCGTCTCCTGGAAACCTTACTTGGAAGATGGAACTTCACGAGTATCCAGAGACTGCTATGTGGAAAGGTTCTCAAGAATACTTTAGGCTTGGTCCTTGGAATGGTCAGAGGGTCTCTGGGAAACCACCAGCTGCCGTCCCAATTTTGAAGTTCAATTTCGTGTTCAATAAGGATGAAGTTTATTATCAATATTTAGTCCCAAACAAGTCTTTGACTGTGATGATGGTGCTGAATCAATCCAATTCTATGAGAGAAATTTACTTACTGTCACCAGAGAGGAGGAGCTGGAGGCTTATTGCATCCCTTCCAAGAGATTACTGTGACAATTATGCACTTTGTGGTGCCTATGGATATTGTGACATTAGGAGTACCCCAGCTTGCACTTGTTTGCAAGGATTCAGTCCTAGATCACCAGAAAGTTGGAAATCAATGGTGTTTTCCGATGGGTGTGCTCGCAATATGCCAATGAATTGTCAGGATCAGGTTGGGTTTCGACAATTTACTCATTTGAAACTTCCTGATACAACTCACACCTGGGTGAACACTACCATGAATCTCCAAGAATGCAGGGAAAAGTGCTTGAGTAACTGTTCTTGTATGGCTTATTCAAACACAAACATCAGTCAAGGTAGCAATGGCTGTGTTAACTGGTTTGCTGATTTAATTGATCTTAAATTTGTTCCAGATGGTGGGCAGGATCTATATATCAGAATGCCTGCATCAGAGTTAGAAGCTAAATTTCATCACAAGAAGAGGACTGGAGTGGTGGTTGGCGCTGCCATTGCCATTGCCTCAAGCTTGGCAATCCTCTTGACTCTTCTCTACATCTACAAAAAGAGATCGAATGTAAAAGGTAACCATGATGAAGGTGCTGAAGACCTAGAGCTTCCATTGTTTGATTTATCTGTGATAAATAGTGCTACACATCACTTCTCATCGAATAATAAACTTGGAGAAGGTGGCTTTGGACCTGTGTATTGGGGAAAGCTAGAGGATGGCCAAGAAATTGCAGTGAAGAGACTTTCAAAAAGTTCCGGACAAGGAGTGGATGAATTCAAAAATGAAGTGATACTAATAGCAAAACTACAACACCGAAATCTTGTAAAACTTCTTGGTTGTTGCATCCAAGGAGTTGAAAAGCTGCTAATTTATGAATATATGCCCAACAAAAGCTTGGATTCTTTCATATTTGATGAAACTCGAAGTAAACTATTGGATTGGTCCAAACGCTTTCATATTATTAACGGCATTGCAAGAGGACTTGTCTATCTTCATCACGATTCTAGACTAAGAATTATTCATAGAGATTTAAAAGCAAGTAATGTTTTACTCGATATCAACATGAATCCAAAGATTTCAGATTTTGGCATCGCAAAAACTTTTGGTGGTGATGAGACTGAAGGAAATACCAAAAGAGTTGTCGGAACCTATGGATATATGGCACCAGAATATGCTATTGATGGACAATTTTCAGTAAAATCAGATGCATTTAGCTTCGGTATTTTACTTCTAGAAATCGTGAGTGGAAAGAAAAATAGACGGTTTTATATGCCAAATCATCATCTCAATCTCATTGGATATGCATGGAAATTATGGAAGGAAGGAAATCCAGTGGAGCTAATTGATAACACAGTTGGAGAAACATACAAATTATCAGAAGTTTTGAGATGCATTCATGTTGGTTTGTTATGTGTTCAACAACATCCCGATGATCGACCGACAATGTCATCCGTAGTTGTTATGTTGGGAAGTGAAAGTTGCTTACCTCAACCAAATCAGCCAGGCTTCTTCATGGAAAATCATAAATCATCTGAATTTGATTTTCCCTCAAACATCGATCAATCAATTTCAACCAATCAACTAACCATCACATCACTAGAGCCTCGATGA 2436 39.24 MKLIIFFLGFLLLAMKAEPEADDFLTHSQSLLDGPDHNTLISKNGIFELGFFSPGLSKNRYLGIWYKNLSLQTYVWVANRDNPINDSSGILVINATGHIMLLRHDAAVVWSARLLRKVLNAKLQLLDTGNLVLRDGNDADSENYMWQSFDYPTDSFLPGMKLGWDLKNRINRILSAWKNPDDPSPGNLTWKMELHEYPETAMWKGSQEYFRLGPWNGQRVSGKPPAAVPILKFNFVFNKDEVYYQYLVPNKSLTVMMVLNQSNSMREIYLLSPERRSWRLIASLPRDYCDNYALCGAYGYCDIRSTPACTCLQGFSPRSPESWKSMVFSDGCARNMPMNCQDQVGFRQFTHLKLPDTTHTWVNTTMNLQECREKCLSNCSCMAYSNTNISQGSNGCVNWFADLIDLKFVPDGGQDLYIRMPASELEAKFHHKKRTGVVVGAAIAIASSLAILLTLLYIYKKRSNVKGNHDEGAEDLELPLFDLSVINSATHHFSSNNKLGEGGFGPVYWGKLEDGQEIAVKRLSKSSGQGVDEFKNEVILIAKLQHRNLVKLLGCCIQGVEKLLIYEYMPNKSLDSFIFDETRSKLLDWSKRFHIINGIARGLVYLHHDSRLRIIHRDLKASNVLLDINMNPKISDFGIAKTFGGDETEGNTKRVVGTYGYMAPEYAIDGQFSVKSDAFSFGILLLEIVSGKKNRRFYMPNHHLNLIGYAWKLWKEGNPVELIDNTVGETYKLSEVLRCIHVGLLCVQQHPDDRPTMSSVVVMLGSESCLPQPNQPGFFMENHKSSEFDFPSNIDQSISTNQLTITSLEPR 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40611922 40631961 - evm.model.ptg000003l.1076 HCH6g0716 546210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0716 811 Pfam S-locus glycoprotein domain 210 318 IPR000858 GO:0048544(InterPro)
HCH6g0716 811 SMART blect_4 31 152 IPR001480 -
HCH6g0716 811 CDD STKc_IRAK 499 764 - -
HCH6g0716 811 Pfam PAN-like domain 340 406 IPR003609 -
HCH6g0716 811 PIRSF SRK 1 811 IPR024171 GO:0004674(InterPro)
HCH6g0716 811 ProSiteProfiles Protein kinase domain profile. 493 778 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0716 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 569 772 - -
HCH6g0716 811 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0716 811 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 23 778 - -
HCH6g0716 811 SMART ntp_6 341 420 IPR003609 -
HCH6g0716 811 Gene3D - 18 149 IPR036426 -
HCH6g0716 811 SUPERFAMILY Protein kinase-like (PK-like) 476 764 IPR011009 -
HCH6g0716 811 Pfam D-mannose binding lectin 73 178 IPR001480 -
HCH6g0716 811 ProSiteProfiles Bulb-type lectin domain profile. 22 146 IPR001480 -
HCH6g0716 811 CDD PAN_AP_plant 337 421 - -
HCH6g0716 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 149 - -
HCH6g0716 811 Pfam Domain of unknown function (DUF3403) 767 811 IPR021820 GO:0004674(InterPro)
HCH6g0716 811 CDD B_lectin 28 152 IPR001480 -
HCH6g0716 811 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 183 IPR036426 -
HCH6g0716 811 Gene3D Transferase(Phosphotransferase) domain 1 569 771 - -
HCH6g0716 811 SMART serkin_6 493 764 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0716 811 Gene3D Phosphorylase Kinase; domain 1 467 568 - -
HCH6g0716 811 Pfam Protein tyrosine and serine/threonine kinase 496 762 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0716 811 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 458 568 - -
HCH6g0716 811 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0592 HCH-Chr3:4073130 HCH6g0716 HCH-Chr6:40611922 7.10E-220 dispersed
HCH3g0593 HCH-Chr3:4079324 HCH6g0716 HCH-Chr6:40611922 3.20E-204 dispersed
HCH3g0595 HCH-Chr3:4089088 HCH6g0716 HCH-Chr6:40611922 6.00E-192 dispersed
HCH3g0596 HCH-Chr3:4100816 HCH6g0716 HCH-Chr6:40611922 2.90E-188 dispersed
HCH6g0716 HCH-Chr6:40611922 HCH6g0720 HCH-Chr6:40727470 2.90E-250 dispersed
HCH6g0721 HCH-Chr6:40741943 HCH6g0716 HCH-Chr6:40611922 4.00E-35 dispersed
HCH6g0716 HCH-Chr6:40611922 HCH6g0718 HCH-Chr6:40666946 0.00E+00 proximal
HCH12g1129 HCH-Chr12:8876046 HCH6g0716 HCH-Chr6:40611922 6.20E-301 wgd
HCH14g0858 HCH-Chr14:36383985 HCH6g0716 HCH-Chr6:40611922 2.10E-169 wgd
HCH2g0774 HCH-Chr2:51395714 HCH6g0716 HCH-Chr6:40611922 2.10E-112 wgd
HCH3g0586 HCH-Chr3:4014815 HCH6g0716 HCH-Chr6:40611922 1.60E-187 wgd
HCH6g0716 HCH-Chr6:40611922 HCH7g0198 HCH-Chr7:1371912 1.80E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81569 PF07714 PK_Tyr_Ser-Thr 4.10E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0716 - - - 0.0