Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0718 ATGATTATGGGTACTTTCTCTCTTACTCTCTTTGCTTCTAATTTAGTTTTTTTCTTTCTCTTTATGGTTGCAGCTTCTATTGATTCCTTAACTTCTCAAAACCCATATCTCAACGACAACCTTAATAACACCACCTTCTTAGTCTCTAAAAATGGAAACTTTGAATTGGGTTTTTTCAGTCCTGGTGTTTCCGACAAGCGTTACTTGGGAATTTGGTTTAAGAATCGACGAGGACCCACTTCTGTTTGGGTTGCTAATAGGAAAAACCCCATTAATGATTCCTCTGGAGTATTGGTTTTGGACAATACTACAGGCAATCTTACACTCTATAGTAACAATGCTACTATTGTTTGGTCTGCTAAGTTACTGAGAAAAGTCTCCAATGGGATACTTCAGCTCTTGGACACTGGAAATCTTGTGCTGAGAGATGGAAAAGATGGGATTTTTGAAAATTATTCATGGCAAAGTTTTGATTACCCAACTGATACTCTCTTGCCTGGAATGAAACTCGGTTGGGACTTGAGGAATAATATAGATCGGAGTTTATCGGCTTGGACGAGTCTGAATGACCCATCTCCTGGAAACTTTAGTTGGAGCATGGAACTTCATGCATATCCTGAGTCTGTTATGTGGAAAGGTTCTCAAGAATACTTCAGACATGGTCCATGGAATGGTGTAAGGGTCACTAGTAGACCACTTGGTATAGCGCCGATTTTGAACTTCAACTTTATTTCCAATGAGGATGAGGTTTATTACCAATACTCTTTGGTAAACAAGTCTTTTACAGTGATGGTGGTGTTGAACCAATCTGATTATATGCGTAAAATGTACTTATGGTCTGCGGATGAGCGAAAGTGGAGGACCTATACTTCTCTGCCGAGAGATTTCTGTGACAATTATGCTCTCTGTGGTGCCTATGGATATTGTGATATAAGGGTTACTCCATCTTGTAAATGTCTGGAAGGATTTAAGCCAAAATCACCTGACAAATGGAAGGCAGGGGAATTTGCAGATGGCTGTGTTCGAAATAAACCGGTGAATTGTCATGATGAAGTTGGATTTGCGCAATTCAACCAGTTGAAATTGCCTGACACAAAGCATACTTGGGTCAACAGAAGCATGAATCTTGAAGAATGCATGGAAAAATGCTTAAGTAACTGTTCTTGTATGGCTTATGCAAATTCCAATATCAGTGGAAGTGGCAGTGGTTGTGCCTTATGGATTGGTGATCTAATTGACCTTAAATTAATTCCAGATGCAGGACAAGATTTATATGTCAGGTTGCTAGCATCAGAATTAGTCAAGCATGGAGAGACACAAAAAAGATTCAATTCTAAGGTGAAGATTGGTGTTGGGATTGCCACTGGTTTAATTTTGGCAATCCTCTTCACAGGCTTCTATATTTTCAAAAAGAAATCAGGCTTCATAGATGGTCGTGAAAAAATAGAAGCTGAAGATCTGGAGCTTCCCTTGTTTGATCTATCCTTGATAAATAGTGCCACAGATAACTTTTCACTTCACAATAAGCTTGGAGAAGGTGGCTTTGGACCAGTATATAAGGGCAAGCTTACAAATGGACAAGAAATTGCAGTAAAGAGACTTTCACAGAGTTCTGGGCAGGGGATAAATGAGTTCAAGAATGAAGTAATCTTAATTGCAAAGCTTCAACATAGAAATCTCGTAAAGCTTCTTGGTTTCTGTATTCAAGGAGAAGAGAAGATGCTAATTTATGAGTATATGCCCAACAAAAGTTTGGACTTCTTTATATTTGATCGATCACGGCGTCAATTATTAGATTGGTCAAAACGTTATCACATTATATGTGGAATTGCAAGAGGACTTGTCTATCTTCATCAAGATTCCAGATTGAGGATTATACACAGAGATTTAAAGGCAAGTAATGTTTTATTAGATGTGGATATGAATCCAAAAATCTCAGATTTTGGTCTTGCTAGAACTTGTGGCGGGGATCAGACAGAAGGAAAGACGAGAAGAGTGGTTGGAACCTACGGATATATGGCACCAGAATATGCATTTGATGGGCAATTCTCAGTAAAATCTGATGCCTTTAGTTTTGGTATTTTGTTGTTGGAGATCATTAGTGGAAAAAGAAGTAGAGGTTTTTGTCACTTGAATGAGCAGAATCTTATTGGATATGCATGGCGATTGTGGATGGAGGGAAATCCAGAAGAATTGATCGATGATGCCATAAGAGAAACATGCATTTTTTCAGCAGTATTGAGATGTATCCATATCAGTCTGTTATGCGTTCAACAACATCCCAATGATCGACCGACGATGTCATCCGTGGTTATGATGCTAGGTTGTGAAATTCCTTTGCCGCAACCTAAACAACCTGGTTTTTTCATAGAACATGAAACCATTACAATGGAAGGTGACTCAAATAAAGATAAATCAGCTTCAACCAATGAATTGACTATTACACTCCCAGATCCTCGATAA 2463 38.53 MIMGTFSLTLFASNLVFFFLFMVAASIDSLTSQNPYLNDNLNNTTFLVSKNGNFELGFFSPGVSDKRYLGIWFKNRRGPTSVWVANRKNPINDSSGVLVLDNTTGNLTLYSNNATIVWSAKLLRKVSNGILQLLDTGNLVLRDGKDGIFENYSWQSFDYPTDTLLPGMKLGWDLRNNIDRSLSAWTSLNDPSPGNFSWSMELHAYPESVMWKGSQEYFRHGPWNGVRVTSRPLGIAPILNFNFISNEDEVYYQYSLVNKSFTVMVVLNQSDYMRKMYLWSADERKWRTYTSLPRDFCDNYALCGAYGYCDIRVTPSCKCLEGFKPKSPDKWKAGEFADGCVRNKPVNCHDEVGFAQFNQLKLPDTKHTWVNRSMNLEECMEKCLSNCSCMAYANSNISGSGSGCALWIGDLIDLKLIPDAGQDLYVRLLASELVKHGETQKRFNSKVKIGVGIATGLILAILFTGFYIFKKKSGFIDGREKIEAEDLELPLFDLSLINSATDNFSLHNKLGEGGFGPVYKGKLTNGQEIAVKRLSQSSGQGINEFKNEVILIAKLQHRNLVKLLGFCIQGEEKMLIYEYMPNKSLDFFIFDRSRRQLLDWSKRYHIICGIARGLVYLHQDSRLRIIHRDLKASNVLLDVDMNPKISDFGLARTCGGDQTEGKTRRVVGTYGYMAPEYAFDGQFSVKSDAFSFGILLLEIISGKRSRGFCHLNEQNLIGYAWRLWMEGNPEELIDDAIRETCIFSAVLRCIHISLLCVQQHPNDRPTMSSVVMMLGCEIPLPQPKQPGFFIEHETITMEGDSNKDKSASTNELTITLPDPR 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40666946 40670214 + evm.model.ptg000003l.1074 HCH6g0718 546212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0718 820 Pfam Protein tyrosine and serine/threonine kinase 505 773 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0718 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0718 820 ProSiteProfiles PAN/Apple domain profile. 348 429 IPR003609 -
HCH6g0718 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 157 - -
HCH6g0718 820 SMART blect_4 38 160 IPR001480 -
HCH6g0718 820 ProSiteProfiles Bulb-type lectin domain profile. 32 154 IPR001480 -
HCH6g0718 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 191 IPR036426 -
HCH6g0718 820 Pfam S-locus glycoprotein domain 218 327 IPR000858 GO:0048544(InterPro)
HCH6g0718 820 SMART serkin_6 504 774 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0718 820 Pfam Domain of unknown function (DUF3403) 779 820 IPR021820 GO:0004674(InterPro)
HCH6g0718 820 MobiDBLite consensus disorder prediction 801 820 - -
HCH6g0718 820 CDD B_lectin 41 160 IPR001480 -
HCH6g0718 820 Pfam D-mannose binding lectin 80 185 IPR001480 -
HCH6g0718 820 Pfam PAN-like domain 348 414 IPR003609 -
HCH6g0718 820 MobiDBLite consensus disorder prediction 799 820 - -
HCH6g0718 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 470 579 - -
HCH6g0718 820 CDD STKc_IRAK 510 774 - -
HCH6g0718 820 CDD PAN_AP_plant 345 428 - -
HCH6g0718 820 PIRSF SRK 1 820 IPR024171 GO:0004674(InterPro)
HCH6g0718 820 SMART ntp_6 349 428 IPR003609 -
HCH6g0718 820 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 21 786 - -
HCH6g0718 820 SUPERFAMILY Protein kinase-like (PK-like) 488 788 IPR011009 -
HCH6g0718 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 580 781 - -
HCH6g0718 820 Gene3D Phosphorylase Kinase; domain 1 478 579 - -
HCH6g0718 820 Gene3D - 32 157 IPR036426 -
HCH6g0718 820 Gene3D Transferase(Phosphotransferase) domain 1 580 778 - -
HCH6g0718 820 ProSiteProfiles Protein kinase domain profile. 504 788 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1129 HCH-Chr12:8876046 HCH6g0718 HCH-Chr6:40666946 3.60E-293 dispersed
HCH3g0590 HCH-Chr3:4047209 HCH6g0718 HCH-Chr6:40666946 2.10E-182 dispersed
HCH4g1384 HCH-Chr4:10170877 HCH6g0718 HCH-Chr6:40666946 4.80E-131 dispersed
HCH4g1385 HCH-Chr4:10174695 HCH6g0718 HCH-Chr6:40666946 7.80E-139 dispersed
HCH6g0718 HCH-Chr6:40666946 HCH6g0720 HCH-Chr6:40727470 1.50E-289 dispersed
HCH6g0716 HCH-Chr6:40611922 HCH6g0718 HCH-Chr6:40666946 0.00E+00 proximal
HCH6g0718 HCH-Chr6:40666946 HCH6g0719 HCH-Chr6:40672283 1.50E-169 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81570 PF07714 PK_Tyr_Ser-Thr 2.40E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0718 - - - 0.0