Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0719 ATGGCAGATTCCAGTGAAAAACTAGAAGCTAAAGACTTGGAACTCCCCTTCTTTGAACTATCATTGATAAATCGTGCAACAAATAATTTCTCTATGAATAATAAGCTTGGGGAAGGTGGTTTTGGCCCGGTATATAAGGGAAAACTTGAAAACGGACAAGATATTGCAGTGAAAAGACTTTCGAAGAGTTCTGGACAAGGAATGAATGAGTTCAAGAACGAGGTAATATTAATTGCAAAGCTTCAACATCGAAATCTAGTAAGACTTCTTGGTTGTTGTGTTCAAGGAGAAGAGAAAATGCTAATTTACGAGTACATGCCCAACAAAAGTTTGGACTTCTTCATATTTGATCAAACACGTCGTCAATTACTAGATTGGTCCAAACGTTATCATATTATTTGTGGGATTGCAAGAGGACTTGTTTACCTTCATCAAGATTCCCGATTAAGGATTATACACAGAGATCTAAAAGCGAGTAATGTTTTGCTTGATGTGGATTTGAATCCAAAAATCTCAGATTTCGGTCTTGCTAAAACTTGTGGTGGAGATCAGATAGAAGGAAATACTGAAAGAGTGGTTGGAACCTTTGGATATATGGCGCCAGAATATGCTTTTGATGGACAATTCTCGACAAAATCTGACGTATTTAGTTATGGCATTTTGTTATTGGAGATCATAAGTGGAAAGAGAAATAGAGGTTTTCGGCATTTGAATGAAAGAAACCTTATCGGATATGTATGGCAGTTGTGGAAAGAGGGAAATCCAGAAGAAATAATCGATGAAAGTATTAAAGAAACATGCAATTTCTCAGAGACATTGAGATGCATTCACATTAGTCTATTATGTGTTCAACGACATCCTAATAATCGACCAACAATGTCATCAGTGGTTATGATGTTATGTTGCGAAATTCCATTACCTCAACCAATACAACCAGGATTCTTCATGGAAGAAGAAGTCAACAAAATGGACTTTGATTCCAACAATGATCAATCAACTTCAACTTCAACCAATGAATTAACCATCACACTCCCACAACCTAGATAA 1047 36.29 MADSSEKLEAKDLELPFFELSLINRATNNFSMNNKLGEGGFGPVYKGKLENGQDIAVKRLSKSSGQGMNEFKNEVILIAKLQHRNLVRLLGCCVQGEEKMLIYEYMPNKSLDFFIFDQTRRQLLDWSKRYHIICGIARGLVYLHQDSRLRIIHRDLKASNVLLDVDLNPKISDFGLAKTCGGDQIEGNTERVVGTFGYMAPEYAFDGQFSTKSDVFSYGILLLEIISGKRNRGFRHLNERNLIGYVWQLWKEGNPEEIIDESIKETCNFSETLRCIHISLLCVQRHPNNRPTMSSVVMMLCCEIPLPQPIQPGFFMEEEVNKMDFDSNNDQSTSTSTNELTITLPQPR 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40672283 40673682 - evm.model.ptg000003l.1073 HCH6g0719 546213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0719 348 MobiDBLite consensus disorder prediction 325 348 - -
HCH6g0719 348 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 1 105 - -
HCH6g0719 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0719 348 MobiDBLite consensus disorder prediction 326 348 - -
HCH6g0719 348 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 106 307 - -
HCH6g0719 348 Pfam Protein tyrosine and serine/threonine kinase 31 299 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0719 348 SUPERFAMILY Protein kinase-like (PK-like) 15 317 IPR011009 -
HCH6g0719 348 CDD STKc_IRAK 36 301 - -
HCH6g0719 348 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 315 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH6g0719 348 Gene3D Transferase(Phosphotransferase) domain 1 106 304 - -
HCH6g0719 348 SMART serkin_6 30 300 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0719 348 Gene3D Phosphorylase Kinase; domain 1 4 105 - -
HCH6g0719 348 ProSiteProfiles Protein kinase domain profile. 30 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0719 HCH-Chr6:40672283 HCH6g0722 HCH-Chr6:40742348 3.10E-156 dispersed
HCH6g0718 HCH-Chr6:40666946 HCH6g0719 HCH-Chr6:40672283 1.50E-169 tandem
HCH6g0719 HCH-Chr6:40672283 HCH6g0720 HCH-Chr6:40727470 5.80E-155 tandem
HCH6g0719 HCH-Chr6:40672283 HCH7g0202 HCH-Chr7:1396888 1.80E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81571 PF07714 PK_Tyr_Ser-Thr 5.80E-51 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0719 - - - 0.0