Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0720 ATGAACTCAACGGGTCCCATCGTGCTACTAAGTCATAATACTAGTTTCGTTTGGTGGGCAAGATTATTAAGAAAACTTTCAAATCCAAAGCTCCAGCTTTTGGACACTGGAAATCTCGTTCTGAGAGATGAAGAAGATGAAAATTCAGACAAGTATTCGTGGCAAAGCTTTGATTATCCAACCGATACCATCTTGCCGGGAATGAAGCTTGGGTGGGACTTAAAAAACAAAATAGAGAAAACTCTAACGGCATGGAAGAATCCAAATGATCCATCAGAAGGAGACTTGACTTGGAAGCTGGAACATGTTCAATTTCCTGAGCCAATCATGAGGAAAGGTTCCAAGGAATATGTTAGATTTGGTCCATGGAATGGTTTGAGGTTCAATGTTATTCCAGCACGGAATTCGATTATCGCCACTTTAGATCCCAAGTTCGTCATTGATGAAGATGAGATTTCATGTCAATATTCAGTCAATGATAAGTCATTGGCAGCAATGGTGAAGTTAGACCAATCCACAAATACCCTTTATCTTTACTCCAGGCTTGCTATATCAAAGGGAAAATGGAATATTTTAACGGTGGTTCCAAAAGATTATTGTGATAATTATGCTCTTTGTGGCCCTAATGGATATTGTGATATAAGACAGTCTCCAGTTTGTGCATGTTTGAAAAGCTTTAAGCCAAAGGCAGCAAACGAACGGAGTTCTAAAGGGGAACTTGGAGATTACGGCTGCGAACGCAATAAGCCGCTTAAGTGTTCAGATGAAGTTGGGTTTGCAAAATTCAGTCAGATGAAATTGCCAGACACAAGAGATAGTTGGGTGAATAGAAGCATGAATCTTGAAGAATGCAGAGATAAATGCATCAGAAACTGTTCTTGTATGGCTTTTGCTAATATTGATATCAGAGGGAGTGGCAGTGGTTGTGCTCTCTGGATTGGTGATCTTATTGATCTTAAATTCATTCCAGACCTTGGACAAGATCTCTATGTTCGGTTGCTAGCATCAGAATTAGAGGTCCCAAAAAAATTTAGTTCACAGGTGAAGATTGTTCTGATCGGTATTGTGGCTGGTTTAGTTTTGATAATCTTGGTGACAGGCTGCTTTTACATTTTCAAAAAGAGGTCAAGCTACAAAGATTACTCTGAAAAAATAGAACCCAAAGACCTGGAGCTGCCCATGTTTGAATTATTGTTGATAAATATTGCAACAAATAATTTTTCACTTGATAATAAGATTGGAGAAGGTGGCTTTGGACCAGTATACAAGGGAAAGCTAGCAAATGGACAAGATATTGCAGTGAAAAGGCTTTCACATAGCTCTGGACAAGGGATGAATGAGTTAAAAAATGAGGTAATCCTAATTGCAAAACTTCAACATGGAAATTTAGTGAAGCTTCTTGGCTGCTGCATTCATGGAGAAGAGAGAATGTTAATTTACGAGTACATGCCAAACAAAAGTTTGGACTTCTTCATATTTGATGAAACACGTGGTCGGATTTTAGATTGGTCAAAACGCCACCACATTATATGTGGGATTGCAAGAGGAATTGTTTATCTTCATCAAGATTCTAGATTAAGGATTATACACAGAGATTTAAAAGCAAGTAATATTTTACTTGATGCGGACATGAATCCAAAAATCTCGGACTTTGGTCTTGCTAAAACTTGTTATGGGGATCAAACGGAAGGAAAGACAAGAAGAATCGCCGGAACCTATGGATATATGGCACCAGAATATGCTTTCGAGGGAAAATTCTCAACGAAATCCGATGTATTTAGCTATGGCATTTTGTTGTTGGAGATAATTAGTGGAAGAAAAAGTAGTGGTTTTCGTCATGTGAATGACCCAAACTTAATTAGCCATGCATGGAGGTTATGGAAAGAGGGAAATCCAGAAGAACTTGTGGATGATTCCATAAGAGGATCATGCAACTTCTCAGAAGTGTTGAGATGTATTCATATAAGTCTATTATGCCTTCAACAAGATCCAAATGATCGACCCACAATATCTTCAGTGGTAATGATGATAGCTTATGAAAATCCTTTATTACCAGAGCCTAAGCAGCCAAGCTTTTTTATACAAAATGAAGGGATTATAGTGGATTGTAATTCCAGTAAGGATAAATCAACTTCTGTCAATGAATTATCAATTACACTTCCAGATTTTAGATAG 2175 37.84 MNSTGPIVLLSHNTSFVWWARLLRKLSNPKLQLLDTGNLVLRDEEDENSDKYSWQSFDYPTDTILPGMKLGWDLKNKIEKTLTAWKNPNDPSEGDLTWKLEHVQFPEPIMRKGSKEYVRFGPWNGLRFNVIPARNSIIATLDPKFVIDEDEISCQYSVNDKSLAAMVKLDQSTNTLYLYSRLAISKGKWNILTVVPKDYCDNYALCGPNGYCDIRQSPVCACLKSFKPKAANERSSKGELGDYGCERNKPLKCSDEVGFAKFSQMKLPDTRDSWVNRSMNLEECRDKCIRNCSCMAFANIDIRGSGSGCALWIGDLIDLKFIPDLGQDLYVRLLASELEVPKKFSSQVKIVLIGIVAGLVLIILVTGCFYIFKKRSSYKDYSEKIEPKDLELPMFELLLINIATNNFSLDNKIGEGGFGPVYKGKLANGQDIAVKRLSHSSGQGMNELKNEVILIAKLQHGNLVKLLGCCIHGEERMLIYEYMPNKSLDFFIFDETRGRILDWSKRHHIICGIARGIVYLHQDSRLRIIHRDLKASNILLDADMNPKISDFGLAKTCYGDQTEGKTRRIAGTYGYMAPEYAFEGKFSTKSDVFSYGILLLEIISGRKSSGFRHVNDPNLISHAWRLWKEGNPEELVDDSIRGSCNFSEVLRCIHISLLCLQQDPNDRPTISSVVMMIAYENPLLPEPKQPSFFIQNEGIIVDCNSSKDKSTSVNELSITLPDFR 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40727470 40730834 + evm.model.ptg000003l.1072 HCH6g0720 546214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0720 724 ProSiteProfiles Protein kinase domain profile. 407 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0720 724 Pfam D-mannose binding lectin 2 86 IPR001480 -
HCH6g0720 724 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0720 724 Pfam Protein tyrosine and serine/threonine kinase 408 675 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0720 724 ProSiteProfiles Bulb-type lectin domain profile. 1 54 IPR001480 -
HCH6g0720 724 Gene3D Phosphorylase Kinase; domain 1 381 482 - -
HCH6g0720 724 ProSiteProfiles PAN/Apple domain profile. 253 334 IPR003609 -
HCH6g0720 724 Gene3D Transferase(Phosphotransferase) domain 1 483 682 - -
HCH6g0720 724 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 252 333 - -
HCH6g0720 724 SMART serkin_6 407 679 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0720 724 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 7 690 - -
HCH6g0720 724 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 373 482 - -
HCH6g0720 724 SMART ntp_6 254 333 IPR003609 -
HCH6g0720 724 CDD PAN_AP_plant 250 333 - -
HCH6g0720 724 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 483 685 - -
HCH6g0720 724 Pfam PAN-like domain 253 319 IPR003609 -
HCH6g0720 724 SUPERFAMILY Protein kinase-like (PK-like) 391 704 IPR011009 -
HCH6g0720 724 PIRSF SRK 1 724 IPR024171 GO:0004674(InterPro)
HCH6g0720 724 SUPERFAMILY alpha-D-mannose-specific plant lectins 1 91 IPR036426 -
HCH6g0720 724 Pfam S-locus glycoprotein domain 119 229 IPR000858 GO:0048544(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0716 HCH-Chr6:40611922 HCH6g0720 HCH-Chr6:40727470 2.90E-250 dispersed
HCH6g0718 HCH-Chr6:40666946 HCH6g0720 HCH-Chr6:40727470 1.50E-289 dispersed
HCH6g0720 HCH-Chr6:40727470 HCH6g0743 HCH-Chr6:41900208 3.00E-153 dispersed
HCH6g0720 HCH-Chr6:40727470 HCH6g0722 HCH-Chr6:40742348 6.70E-254 proximal
HCH6g0719 HCH-Chr6:40672283 HCH6g0720 HCH-Chr6:40727470 5.80E-155 tandem
HCH6g0720 HCH-Chr6:40727470 HCH6g0721 HCH-Chr6:40741943 8.10E-44 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81572 PF07714 PK_Tyr_Ser-Thr 8.00E-50 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0720 - - - 0.0