Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0722 ATGATCGCCAGTTTAGATTTCAAGTTCATCAACGATGAAAAGGAGATTTCATTTCAATACGCCGTCCAATATAAGTCATTGATGACAATGATGAAGTTGAACCAGTCCACTAATACCATGTACCTTTACTGGAGGCTTGCAACATCTAAAGAAAATTGGAATCTTTCAACAGCAGCTCCAAACGATTACTGTGATAATTATTCTCTCTGTGGTCCCAATGAATATTGTGATGCAAGCCAATCTCCAGCTTGTGCATGTTTGAAAGGATTTAAGCCAAAAGCACCAAACCAACAGAGTTCTAAAGGGAAACTTGAAGATTATGGCTGCGAACGTAATGAGCCGCCTAAATGTACAGATGAAGTTGGGTTTGCAAAATTCACAGAGATGAAATTGCCAGAAACAAGATATAGTTGGGTGAATAGAAGCATGAATCTTAAAGAATGCAGAGAAAAATGCATCAGGAACTGTTCTTGTACGGCTTATGCAAATACAAATATCAGTGGAAGTGGGAGCGGGTGTGCTATATGGATTGGTGATCTTATTGATCTAAGATTCGTTCCGAATGCTGGCCAAGATCTCTACGTCCGGATGCTGGCTTCAGAACTAGAAAAATTCAAAGAGGTCCCCAAAATACCAGCTGGGGAAAAATCTGGGAACGAAGAGAACCACAAAATAATCAGTACACGGGTGAAGATTGTTCTGACAGTGATTGCCATTGGTTTAATTTTGATTATCTCCGTGATAAGCCTTTACAGTTTCATAGAGAGGTCAAGCCACAAAGATGATTTTGAAAAAATAAAACCCCAAGACTTGGAGCTCCCCATATTTGAGCTATTTTGGATAAATAATGCAACAGATAATTTCTCACCTGATAATAAGGTTGGAGAAGGTGGCTTTGGACCGGTATACAAGGGAAAGTTAGCAAATGGACTAGATATTGCAGTGAAAAGGCTTTCAAGAAGTTCTGGGCAAGGGATGAATGAGTTTAAAAATGAGGTAATCCTATTTGCTAAACTTCAACATCGGAATTTAGTGAAGCTTCTTGGTTGCTGCATTCATGGAGAAGAGAGAATGTTGATTTACGAGTACATGCCCAACAAAAGTTTGGACTTCTTTATATTTGATGAATCACATCGCCGAATTTTAGATTGGTCAAAACGTTACCAAATTATTTGTGGGATTGCAAGAGGAATTGTTTATCTTCATCAAGACTCTAGATTGAGGATTATACATAGAGATTTAAAAGCAAGTAATGTTTTACTTGATGCGGACATGAATCCAAAAATCTCAGATTTTGGCCTTGCTAAAACTTGTTTCGGGGATCAGACAGAAGGAAATACAAGAAGAATTGTTGGAACTTATGGATATATGGCACCAGAGTATGCTTTTGAGGGAAAATTCTCAACAAAATCCGATGTATTTAGCTACGGCATTTTGTTGATGGAGATCATAAGTGGAAATCGAAGCAGATGTTTTCGTCATGCGAACGAGCACAACTTCATTGCATATGCATGGAGGTTGTGGAAAGAGGGAAATCCAGAAGAACTGATTGATGATTTCATAAGAGAATCATGCAACTTCTCAGAGGTGTTAAGATGCATCCAAATCAGCCTATTATGCATTCAAAAGCATCCTAACAATCGACCCGCAATGTCATCAGTGGTGACGATGATGAGCTCTGAAAATCCATTGCCACAACCTAATCAACCAAGCTTTGTTTTGGAAGATGAAGTCATTACACCGGATTCTGATTCCAACAACAGGGATTCAATCAATGAATTAACCATTACGCTTCCAGATCTTCGATAA 1809 38.58 MIASLDFKFINDEKEISFQYAVQYKSLMTMMKLNQSTNTMYLYWRLATSKENWNLSTAAPNDYCDNYSLCGPNEYCDASQSPACACLKGFKPKAPNQQSSKGKLEDYGCERNEPPKCTDEVGFAKFTEMKLPETRYSWVNRSMNLKECREKCIRNCSCTAYANTNISGSGSGCAIWIGDLIDLRFVPNAGQDLYVRMLASELEKFKEVPKIPAGEKSGNEENHKIISTRVKIVLTVIAIGLILIISVISLYSFIERSSHKDDFEKIKPQDLELPIFELFWINNATDNFSPDNKVGEGGFGPVYKGKLANGLDIAVKRLSRSSGQGMNEFKNEVILFAKLQHRNLVKLLGCCIHGEERMLIYEYMPNKSLDFFIFDESHRRILDWSKRYQIICGIARGIVYLHQDSRLRIIHRDLKASNVLLDADMNPKISDFGLAKTCFGDQTEGNTRRIVGTYGYMAPEYAFEGKFSTKSDVFSYGILLMEIISGNRSRCFRHANEHNFIAYAWRLWKEGNPEELIDDFIRESCNFSEVLRCIQISLLCIQKHPNNRPAMSSVVTMMSSENPLPQPNQPSFVLEDEVITPDSDSNNRDSINELTITLPDLR 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40742348 40745097 + evm.model.ptg000003l.1070 HCH6g0722 546216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0722 602 SMART ntp_6 118 197 IPR003609 -
HCH6g0722 602 Pfam PAN-like domain 117 183 IPR003609 -
HCH6g0722 602 CDD STKc_IRAK 294 558 - -
HCH6g0722 602 ProSiteProfiles PAN/Apple domain profile. 117 198 IPR003609 -
HCH6g0722 602 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 253 363 - -
HCH6g0722 602 Gene3D Phosphorylase Kinase; domain 1 262 363 - -
HCH6g0722 602 SUPERFAMILY Protein kinase-like (PK-like) 271 568 IPR011009 -
HCH6g0722 602 Pfam Protein tyrosine and serine/threonine kinase 291 556 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0722 602 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 364 566 - -
HCH6g0722 602 CDD PAN_AP_plant 106 196 - -
HCH6g0722 602 Gene3D Transferase(Phosphotransferase) domain 1 364 568 - -
HCH6g0722 602 SMART serkin_6 288 558 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0722 602 ProSiteProfiles Protein kinase domain profile. 288 572 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0722 602 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 6 570 - -
HCH6g0722 602 Pfam S-locus glycoprotein domain 5 93 IPR000858 GO:0048544(InterPro)
HCH6g0722 602 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0719 HCH-Chr6:40672283 HCH6g0722 HCH-Chr6:40742348 3.10E-156 dispersed
HCH6g0722 HCH-Chr6:40742348 HCH6g0743 HCH-Chr6:41900208 1.60E-147 dispersed
HCH6g0720 HCH-Chr6:40727470 HCH6g0722 HCH-Chr6:40742348 6.70E-254 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81573 PF07714 PK_Tyr_Ser-Thr 2.40E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0722 - - - 0.0