Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0724 ATGCCAACAGTTTGGTTTTCTCTAAAGAAATCTTTGCACTGCAAATCAGAGCCATCAGAAGTTCATGACCCGAAATCCAAGAAACTGAGTTCCATTTTGACTAGAAAAACAGGAGGAAGATCAGGCTGTTCAAGGTCTATAGCAAATCTTAAAGATGTCATTCATGGCAGCAAAAGGCACCTGGAGAGGCCTCCAAGTTGCAGCCCAAGATCTATTGGGAGCAGTGAGTTTCTCAATCCAATAACTCATGAGGTGATTTTGAGTAACTCAAAGTGTGAGCTCAAAATCACTGGTTTTGGAGGATTTCAAGAAGGAGCCGCGGTAGGCGGTGGTGGGAGCGGTGGAGGAGGCGATGTTAACGGTGGTTCAACTTTTGTGGGAACTCTGACACCAGGTACTCCTGGTCCGGGAGGGCACCCCACTATGCATTACTTTAATCATTCCTCGAGGACTTGTTCTACTCCTTCAAGGAAGTTCCCTGTAAGAGAAGGGTCAGGATTTGGCAGTTCTAATAAGACTGGCGGTGGCAGAGGTCGTGGTGGTGGTGGTGGTGGCATTCAATTGAGTAACAGAATCTCTCTTGAGTCTGAGTTTAGTGGTAATGGGGCTTCCTCTACAGTTACCTGCCATAAATGTGGAGAGCAATTTAACCAATGGGAAGCTGCTGAAGCTCATCATCTCTCTAAACATGCTGTGACTGAACTTGTGGAAGGTGATTCATCTAGGAAGATTGTGGAGATAATATGCAGAACAAGCTGGTTAAAGTCTGAGAATCAATGTGGTAGAATTGAGAGAGTACTGAAAGTTCACAACATGCAAAGAACACTCGCTCGGTTCGAAGAGTATCGCGAAACGGTTAAGATTAAAGCAAGCAAACTCCCGAAGAAACATCCCCGGTGCCTTGCCGACGGGAATGAGCTTCTGAGATTCTATGGCACGACGGTCGCCTGCTCTCTTGGCCTAAATGGTTCATCAAGTCTTTGCATATCAGAGAAATGCTGTGTTTGCAGGATTATAAGGAATGGATTCTCAGCAAAGAAAGAGATGAAAGAAGGGATCGGAGTCTTCACGACTTCAACGAGTGCGAGAGCGTTCAACTCCATAGAAGTGTCGGGAGATGATCTTTCATTGACAAGGAAAGCTTTGATCGTTTGCAGAGTGATTGCTGGGAGAGTTCACAGGCCATTGGAGAACATACAAGAAATGGCTGGCCAGACGGGGTTTGATTCATTGGCAGGCAAAGTTGGTCTGCATTCCAATATAGAAGAGCTTTATTTGCTCAATCCTAGAGCCTTGCTCCCTTGCTTTGTGGTAATCTGCAAACCATGA 1329 45.67 MPTVWFSLKKSLHCKSEPSEVHDPKSKKLSSILTRKTGGRSGCSRSIANLKDVIHGSKRHLERPPSCSPRSIGSSEFLNPITHEVILSNSKCELKITGFGGFQEGAAVGGGGSGGGGDVNGGSTFVGTLTPGTPGPGGHPTMHYFNHSSRTCSTPSRKFPVREGSGFGSSNKTGGGRGRGGGGGGIQLSNRISLESEFSGNGASSTVTCHKCGEQFNQWEAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQCGRIERVLKVHNMQRTLARFEEYRETVKIKASKLPKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCISEKCCVCRIIRNGFSAKKEMKEGIGVFTTSTSARAFNSIEVSGDDLSLTRKALIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLHSNIEELYLLNPRALLPCFVVICKP 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 40770916 40772592 + evm.model.ptg000003l.1068 HCH6g0724 546218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0724 442 ProSitePatterns Zinc finger C2H2 type domain signature. 209 230 IPR013087 -
HCH6g0724 442 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 441 - -
HCH6g0724 442 MobiDBLite consensus disorder prediction 149 183 - -
HCH6g0724 442 FunFam C2H2-like zinc finger protein 231 441 - -
HCH6g0724 442 SUPERFAMILY ADP-ribosylation 232 441 - -
HCH6g0724 442 Gene3D - 232 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1145 HCH-Chr12:9199521 HCH6g0724 HCH-Chr6:40770916 1.40E-169 dispersed
HCH13g0102 HCH-Chr13:662705 HCH6g0724 HCH-Chr6:40770916 6.70E-52 dispersed
HCH13g0103 HCH-Chr13:666767 HCH6g0724 HCH-Chr6:40770916 9.30E-62 dispersed
HCH2g1035 HCH-Chr2:53499780 HCH6g0724 HCH-Chr6:40770916 1.90E-45 dispersed
HCH12g0129 HCH-Chr12:684508 HCH6g0724 HCH-Chr6:40770916 7.10E-56 transposed
HCH5g0389 HCH-Chr5:2551655 HCH6g0724 HCH-Chr6:40770916 1.20E-20 transposed
HCH14g0851 HCH-Chr14:36342639 HCH6g0724 HCH-Chr6:40770916 1.80E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33715 None None None None HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0724 - - - 0.0