Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0743 ATGGATCTCAAGTTAGTTCCAGATGGTGGTCAAGAATCTCGAGATCTATACGTTCGAATGCTTGCATCAAAATTAGAAAAGGTCAACAATGAAGAGGTGAAACTCAATCCTAAAATGAAGATTGGAGTGGGAGTTGGGGTTGCCATTGCTTTAACTTTGGCCACGCTCTTACTCATTTTCTACATTTTCAAAAGAAGATCAAGACTGAAGGACGACTGCGACGAAGGAGAAACCGAAGACATGGAGCTACCCTTGTATGAACTATCCTTGATACAAAATGCCACAGATAATTTCTCAGTCAATAATAAGCTTGGAGAAGGTGGTTTTGGACCTGTATATAAGGGCAAACTAATAAGTGGACAAGACATTGCAGTGAAAAGGCTTTCAATGAATTCAGGACAAGGAGTGCATGAATTCAAGAATGAGGTAATGCTGATTGCAAAGCTTCAGCACCGAAATCTAGTAAGGCTTCTTGGTTGCTGCATTCATGGTGAAGAAAAAATGCTAGTTTACGAATACATGCCGAACAAAAGCTTGGACTCCTTCATATTTGATGAAACGAGACGTAATATGTTAGATTGGTCAAAGCGTTTCCACATAATATGCGGTATTGCAAGAGGACTTATTTATCTCCACGAAGATTCTAGATTGAGGATTATACATAGAGATCTAAAAGCGAGTAATGTTTTACTCGATTTAGATATGAACCCAAAAATCTCAGATTTCGGCCTAGCTAGAACTTGCTGTGGGGATCAAACGGAAGGAAATACGAAACGAGTGATTGGAACTTATGGATATATGGCGCCTGAGTATGCAATTGAGGGACAATTTTCAACAAAGTCAGATGTATTTAGCTATGGAATTTTGCTACTAGAGATTGTTAGTGGAAAGAGAAACAGAGGATTTTTTAGTCCAAATCATGACCTTAACCTCCTTGGATATGCATGGAGACTCTGGAAAGAAGGCAATCAAATTGAACTTATTGATGATAGCATGGGAGAAACACATACTTTGTCAGAAGTATTGCGATGCATTCATATTAGTCTCTTATGCATTCAACAACATCCCGATAATCGACCGACGATGTCGTCCGTAGTTCTGATGTTAGGAAGTGAGAGTACACTTCCTCAACCGAAAGAACCCGGATTTCTCATCGGAAAAGATAGACGTAGTATAGATTATCATTCAAGCATGGATCAATCCTATTCAACCAATGAACTAACGCTTACACTACCGGACCCTCGATAG 1248 39.34 MDLKLVPDGGQESRDLYVRMLASKLEKVNNEEVKLNPKMKIGVGVGVAIALTLATLLLIFYIFKRRSRLKDDCDEGETEDMELPLYELSLIQNATDNFSVNNKLGEGGFGPVYKGKLISGQDIAVKRLSMNSGQGVHEFKNEVMLIAKLQHRNLVRLLGCCIHGEEKMLVYEYMPNKSLDSFIFDETRRNMLDWSKRFHIICGIARGLIYLHEDSRLRIIHRDLKASNVLLDLDMNPKISDFGLARTCCGDQTEGNTKRVIGTYGYMAPEYAIEGQFSTKSDVFSYGILLLEIVSGKRNRGFFSPNHDLNLLGYAWRLWKEGNQIELIDDSMGETHTLSEVLRCIHISLLCIQQHPDNRPTMSSVVLMLGSESTLPQPKEPGFLIGKDRRSIDYHSSMDQSYSTNELTLTLPDPR 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 41900208 41902402 - evm.model.ptg000003l.1049 HCH6g0743 546237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0743 415 PIRSF TyrPK_CSF1-R 17 70 - -
HCH6g0743 415 PIRSF TyrPK_CSF1-R 176 402 - -
HCH6g0743 415 PIRSF TyrPK_CSF1-R 96 182 - -
HCH6g0743 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0743 415 CDD STKc_IRAK 104 369 - -
HCH6g0743 415 MobiDBLite consensus disorder prediction 396 415 - -
HCH6g0743 415 SUPERFAMILY Protein kinase-like (PK-like) 82 369 IPR011009 -
HCH6g0743 415 Gene3D Transferase(Phosphotransferase) domain 1 174 378 - -
HCH6g0743 415 Pfam Protein tyrosine and serine/threonine kinase 100 367 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0743 415 ProSiteProfiles Protein kinase domain profile. 98 375 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0743 415 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 63 173 - -
HCH6g0743 415 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 45 383 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH6g0743 415 SMART serkin_6 98 369 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0743 415 Pfam Domain of unknown function (DUF3403) 372 415 IPR021820 GO:0004674(InterPro)
HCH6g0743 415 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 174 377 - -
HCH6g0743 415 Gene3D Phosphorylase Kinase; domain 1 73 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0720 HCH-Chr6:40727470 HCH6g0743 HCH-Chr6:41900208 3.00E-153 dispersed
HCH6g0722 HCH-Chr6:40742348 HCH6g0743 HCH-Chr6:41900208 1.60E-147 dispersed
HCH6g0743 HCH-Chr6:41900208 HCH7g0202 HCH-Chr7:1396888 4.80E-124 dispersed
HCH14g0842 HCH-Chr14:36302300 HCH6g0743 HCH-Chr6:41900208 1.30E-102 wgd
HCH3g0566 HCH-Chr3:3778950 HCH6g0743 HCH-Chr6:41900208 1.30E-110 wgd
HCH6g0743 HCH-Chr6:41900208 HCH7g0221 HCH-Chr7:1485491 2.00E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81575 PF07714 PK_Tyr_Ser-Thr 2.20E-50 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0743 - - - 0.0