Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g0752 | ATGGTATCCCCAGAAAACACGAATTGGCTTTTCGATTATACGTTAATGGATGATATTCCTGTTTCGGATGGGAATTTTGCTGGAACCAATACGGGTTTCTCTTGGTCTGTACCTGCTTTGAATGCCTCTTCTAATCTCAGTGTGGAAATTGATGGATCAATGGTGGAATCAGATGGCTTGAAGGAACCCGGTTCAAAGAAGAGGACTAGAACGGAATCAGGTTGTGCATCTAGCTCAAAAGCTTGTAGGGAGAAGCTGCGGAGGGACAGGTTAAATGACAAGTTTCTGGAATTGGGTGCTATTCTGGAGCCTGGAAGGCCGCCAAAGACGGACAAGGCTGCCATTTTGATTGACGCTGTTCGAATGGTTACTCAGTTACGCGGTGAAGCCCAGATCTTGAAGGACTCAAATACTAGTCTATCAGAGAAAATTAAAGAGTTGAAGGTCGAGAAGAATGAGCTTCGTGATGAGAAACAGAGGTTAAAAGTGGAGAAAGAGAAGTTGGAACAGCAATTAAAAGCCATGAATGCACAACCTGGCTTCTTGCCGCCAGCCATCCCTGCCACTTTTGCTGCTCAAGGGCAAGCACCGGGAAACAAGTTGGTTCCTTTCATCGGTTACCCTGGAGTTGCTATGTGGCAGTTCATGCCGCCTGCAGCCGTCGACACCTCACAAGATCACGTTCTCCGCCCTCCGGTTGCTTGA | 705 | 47.23 | MVSPENTNWLFDYTLMDDIPVSDGNFAGTNTGFSWSVPALNASSNLSVEIDGSMVESDGLKEPGSKKRTRTESGCASSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAAILIDAVRMVTQLRGEAQILKDSNTSLSEKIKELKVEKNELRDEKQRLKVEKEKLEQQLKAMNAQPGFLPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 42023031 | 42025782 | - | evm.model.ptg000003l.1040 | HCH6g0752 | 546246 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g0752 | 234 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 75 | 126 | IPR011598 | GO:0046983(InterPro) | |
HCH6g0752 | 234 | PANTHER | BHLH TRANSCRIPTION FACTOR | 7 | 234 | IPR044818 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro) | |
HCH6g0752 | 234 | SMART | finulus | 81 | 132 | IPR011598 | GO:0046983(InterPro) | |
HCH6g0752 | 234 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 80 | 151 | IPR036638 | GO:0046983(InterPro) | |
HCH6g0752 | 234 | Coils | Coil | 130 | 178 | - | - | |
HCH6g0752 | 234 | CDD | bHLH_AtILR3_like | 80 | 155 | - | - | |
HCH6g0752 | 234 | FunFam | Transcription factor bHLH34 | 66 | 124 | - | - | |
HCH6g0752 | 234 | Pfam | Helix-loop-helix DNA-binding domain | 79 | 127 | IPR011598 | GO:0046983(InterPro) | |
HCH6g0752 | 234 | MobiDBLite | consensus disorder prediction | 55 | 78 | - | - | |
HCH6g0752 | 234 | Gene3D | - | 69 | 156 | IPR036638 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH3g0574 | HCH-Chr3:3843115 | HCH6g0752 | HCH-Chr6:42023031 | 3.90E-51 | dispersed | |
HCH6g0752 | HCH-Chr6:42023031 | HCH8g1308 | HCH-Chr8:48114701 | 6.70E-06 | dispersed | |
HCH7g1322 | HCH-Chr7:46133348 | HCH6g0752 | HCH-Chr6:42023031 | 1.20E-28 | transposed | |
HCH12g1152 | HCH-Chr12:9614208 | HCH6g0752 | HCH-Chr6:42023031 | 9.50E-77 | wgd | |
HCH2g0758 | HCH-Chr2:51219664 | HCH6g0752 | HCH-Chr6:42023031 | 1.30E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33716 | PF00010 | HLH | 1.10E-09 | No_clan | HCH | TF |
Pathway information
