Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0752 ATGGTATCCCCAGAAAACACGAATTGGCTTTTCGATTATACGTTAATGGATGATATTCCTGTTTCGGATGGGAATTTTGCTGGAACCAATACGGGTTTCTCTTGGTCTGTACCTGCTTTGAATGCCTCTTCTAATCTCAGTGTGGAAATTGATGGATCAATGGTGGAATCAGATGGCTTGAAGGAACCCGGTTCAAAGAAGAGGACTAGAACGGAATCAGGTTGTGCATCTAGCTCAAAAGCTTGTAGGGAGAAGCTGCGGAGGGACAGGTTAAATGACAAGTTTCTGGAATTGGGTGCTATTCTGGAGCCTGGAAGGCCGCCAAAGACGGACAAGGCTGCCATTTTGATTGACGCTGTTCGAATGGTTACTCAGTTACGCGGTGAAGCCCAGATCTTGAAGGACTCAAATACTAGTCTATCAGAGAAAATTAAAGAGTTGAAGGTCGAGAAGAATGAGCTTCGTGATGAGAAACAGAGGTTAAAAGTGGAGAAAGAGAAGTTGGAACAGCAATTAAAAGCCATGAATGCACAACCTGGCTTCTTGCCGCCAGCCATCCCTGCCACTTTTGCTGCTCAAGGGCAAGCACCGGGAAACAAGTTGGTTCCTTTCATCGGTTACCCTGGAGTTGCTATGTGGCAGTTCATGCCGCCTGCAGCCGTCGACACCTCACAAGATCACGTTCTCCGCCCTCCGGTTGCTTGA 705 47.23 MVSPENTNWLFDYTLMDDIPVSDGNFAGTNTGFSWSVPALNASSNLSVEIDGSMVESDGLKEPGSKKRTRTESGCASSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAAILIDAVRMVTQLRGEAQILKDSNTSLSEKIKELKVEKNELRDEKQRLKVEKEKLEQQLKAMNAQPGFLPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42023031 42025782 - evm.model.ptg000003l.1040 HCH6g0752 546246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0752 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983(InterPro)
HCH6g0752 234 PANTHER BHLH TRANSCRIPTION FACTOR 7 234 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
HCH6g0752 234 SMART finulus 81 132 IPR011598 GO:0046983(InterPro)
HCH6g0752 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 151 IPR036638 GO:0046983(InterPro)
HCH6g0752 234 Coils Coil 130 178 - -
HCH6g0752 234 CDD bHLH_AtILR3_like 80 155 - -
HCH6g0752 234 FunFam Transcription factor bHLH34 66 124 - -
HCH6g0752 234 Pfam Helix-loop-helix DNA-binding domain 79 127 IPR011598 GO:0046983(InterPro)
HCH6g0752 234 MobiDBLite consensus disorder prediction 55 78 - -
HCH6g0752 234 Gene3D - 69 156 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0574 HCH-Chr3:3843115 HCH6g0752 HCH-Chr6:42023031 3.90E-51 dispersed
HCH6g0752 HCH-Chr6:42023031 HCH8g1308 HCH-Chr8:48114701 6.70E-06 dispersed
HCH7g1322 HCH-Chr7:46133348 HCH6g0752 HCH-Chr6:42023031 1.20E-28 transposed
HCH12g1152 HCH-Chr12:9614208 HCH6g0752 HCH-Chr6:42023031 9.50E-77 wgd
HCH2g0758 HCH-Chr2:51219664 HCH6g0752 HCH-Chr6:42023031 1.30E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33716 PF00010 HLH 1.10E-09 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0752 - - - 0.0