Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0771 ATGTCTGATCTCGACGTTCAGGTTCCCACAGCCTTCGATCCATTTGCTGATGCAAATGCTGAGGATTCTGGTGCCGGGGCAAAAGAGTACGTGCACATTCGAATTCAGCAGCGGAATGGTAGGAAAAGCCTGACCACGGTGCAGGGACTGAAGAAAGAATTTAGCTACAATAAGATATTGAAAGACCTTAAAAAGGAGTTTTGTTGTAATGGTACTGTTGTTCAGGATCCAGAACTAGGGCAGGTTATTCAACTGCAAGGTGACCAACGGAAGAATGTGTCCACGTTTCTTGTTCAGGCTGGCATAGTGAAGAAGGAAAATATTAAGATTCATGGTTTCTGA 342 44.15 MSDLDVQVPTAFDPFADANAEDSGAGAKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42473771 42474683 + evm.model.ptg000003l.1021 HCH6g0771 546265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0771 113 Gene3D - 1 113 - -
HCH6g0771 113 SUPERFAMILY eIF1-like 3 113 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH6g0771 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - GO:0003723(PANTHER)
HCH6g0771 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH6g0771 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743(InterPro)
HCH6g0771 113 NCBIfam translation initiation factor SUI1 5 113 IPR005874 GO:0003743(InterPro)
HCH6g0771 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH6g0771 113 FunFam Eukaryotic translation initiation factor SUI1 2 113 - -
HCH6g0771 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0771 HCH-Chr6:42473771 HCH7g0228 HCH-Chr7:1517254 1.20E-56 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0771 K03113 - csv:101219651 221.09