Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0777 ATGATTTCTTCTATGAGTCAATCGGCAAAACCCATTACTGGGTCTGGCGTAATTTTCCGGCGGAATGCCCCGGCGGCGCCGATTCGACGTTTTTCAATTCTTCCTCCATTGCCGGAGCTTAAATTTCGGGGGTCAGTTGTGAATTTGCAAAATGCGCTTTATATTTCTTCAGTTTCTAAATTTGGACCTTTGACAGCTCCGAAGGGTAATTTGATAAAGTGTGAAGCTTACGAGGCTGACCGATCGTTGCCGATCGAGTCGGCCGTTGAGATGACGGTGAGCGACGCGCCACCGTCGGAGGCGGCGAAGAAAGTGAGAATTGGATTGTATTTTGCTTTATGGTGGGGTTTGAATGTGGTGTTTAATATTTATAATAAGAAGGTTTTGAATGCCTTTTCATATCCTTGGTTAACTTCAACACTTTCTCTTGCTGTTGGTTCTCTCATCATGTTGTTTTCATGGATGACAAGGATCGCCGAGGCACCAAAAACCGATTTCGAATTCTGGAAATCTTTGTTTCCGGTTGCTGTGGCCCATACAATTGGACATGTAGCGGCAACTGTGAGTATGTCAAAGGTTGCTGTCTCATTCACCCATATCATCAAGAGTGGTGAGCCAGCATTTAGCGTTTTGGTTTCAAGGTTCCTGTTGGGAGAGACTTTCCCAGCTTCGGTTTACCTGTCTCTCCTCCCGATTATCGGTGGCTGTGCCCTTGCTGCTGTGACGGAACTTAACTTCAACATGATTGGTTTCATGGGAGCCATGATATCAAACTTGGCGTTTGTCTTCCGAAACATATTTTCTAAGAAAGGCATGAAGGGAAAGTCTGTTAGTGGAATGAACTATTATGCCTGCCTGTCCATATTGTCCCTTTTGATTCTTACCCCATTTGCAATCGCGGTCGAAGGACCACAGGTGTGGGCTGCTGGATGGAAATCAGCCCTCTCTGAGATAGGACCTAATTTTGTATGGTGGGTAGCAGCACAGAGTGTGTTCTATCATCTCTACAACCAAGTATCGTACATGTCTCTGGATGAGATTTCTCCCTTGACATTTAGCATTGGAAACACCATGAAACGTATTTCTGTCATAGTCTCTGCCATCATTATCTTCCGCACGCCTGTCCAACCTGTCAACGCCCTTGGAGCTGCCATTGCTGTTCTTGGAACCTTTTTGTATTCTCAGGCAAAGCAGTGA 1197 45.53 MISSMSQSAKPITGSGVIFRRNAPAAPIRRFSILPPLPELKFRGSVVNLQNALYISSVSKFGPLTAPKGNLIKCEAYEADRSLPIESAVEMTVSDAPPSEAAKKVRIGLYFALWWGLNVVFNIYNKKVLNAFSYPWLTSTLSLAVGSLIMLFSWMTRIAEAPKTDFEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPASVYLSLLPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSILSLLILTPFAIAVEGPQVWAAGWKSALSEIGPNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSAIIIFRTPVQPVNALGAAIAVLGTFLYSQAKQ 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42561872 42564860 + evm.model.ptg000003l.1015 HCH6g0777 546271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0777 398 PANTHER SOLUTE CARRIER FAMILY 35 101 397 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
HCH6g0777 398 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 106 397 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
HCH6g0777 398 SUPERFAMILY Multidrug resistance efflux transporter EmrE 148 241 - -
HCH6g0777 398 Pfam Triose-phosphate Transporter family 106 394 IPR004853 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0878 HCH-Chr1:57315873 HCH6g0777 HCH-Chr6:42561872 3.10E-62 dispersed
HCH7g1518 HCH-Chr7:47715233 HCH6g0777 HCH-Chr6:42561872 5.20E-86 transposed
HCH12g1168 HCH-Chr12:9962149 HCH6g0777 HCH-Chr6:42561872 1.40E-173 wgd
HCH14g0830 HCH-Chr14:36209074 HCH6g0777 HCH-Chr6:42561872 5.30E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0777 K15283 - csv:101216838 665.611