Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0781 ATGAATTGCTTTCAATGTTGCATGTCACAGGAGAAAATCAACAGGAAGTCATTGAAAAAGAGCATTAAGGAGTATCATGATACAAAAACTTTAGCCTCATTTGCTAACATTTCTTTCAAATCTGATGGCAGTAGGAGAAGGTATATAACTGAAGAGATAAAGAAGATTGGAAAAGGAAACATCTCAGCTCAAATATTCACTTTCCGTGAGCTATGCGTCGCAACGAACAACTTCAACCACGAGAATCTGTTGGGCGAAGGTGGTTTTGGAAGGGTTTACAAAGGTCACATTGAAAGCACCAATCAAGTTGTTGCTGTGAAGCAACTTGATAGAAATGGATTTCAAGGAAACAGAGAATTCCTTGTGGAGGTTCTGATGTTGAGTCTTCTTCATCAACCCAATCTTGTCAATTTGGTTGGATATTGTGCTGATGGAGATCAGAGGATTTTGGTTTATGAGTACATGGCCAAAGGTTCCTTGGAGGATCATCTTCTTGATATTACTTCAGAAAAAGAGCCTCTGGATTGGAACACAAGGATGAAAATCGCTGAAGGAGCAGCAAGAGGACTCGAATACTTACACGAAACAGCGAATCCCCCCGTGATATACCGCGATTTCAAAGCTTCGAATATATTGTTGGATGAGGAATTCAACCCAAAACTTTCTGATTTTGGACTTGCAAAGTTAGGTCCTACTGGGGATAAAACCCATGTTTCCACTAGAGTAATGGGAACCTATGGCTACTGTTCTCCTGAATATGCACTTACAGGACAATTGACAACCAAATCAGATGTCTACAGTTTCGGTGTCGTGTTTCTGGAGATAATCACTGGAAGAAGAGTTATAGACAATGCAAGACCAACAGCAGAGCAGAATTTAATCACTTGGGCACAGCCACTTTTTAAAGATAGAAGGAAGTTTACACTAATGGCAGATCCAAAGCTAGAGGGAAATTACCCAGTAAAGGCTCTATATCAAGCTCTAGCAGTAGCAGCCATGTGTTTACAAGAGGAAGCGAATACTCGGCCATTGATCAGCGACGTTGTTACAGCTCTTGAATACTTGGCTGTAGATAAGAATGTGGATGCAGATGTAGAAAACAACTCAGAATCAGGATCAGATTCGGTTTCGGTTTCGGGTTCGGGTTCAGCTTCTCCTGATAGAAGTAGTGATGAAGATAATGATAATGTTGAGAGTGATGACAGGTGA 1209 40.78 MNCFQCCMSQEKINRKSLKKSIKEYHDTKTLASFANISFKSDGSRRRYITEEIKKIGKGNISAQIFTFRELCVATNNFNHENLLGEGGFGRVYKGHIESTNQVVAVKQLDRNGFQGNREFLVEVLMLSLLHQPNLVNLVGYCADGDQRILVYEYMAKGSLEDHLLDITSEKEPLDWNTRMKIAEGAARGLEYLHETANPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCSPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDNARPTAEQNLITWAQPLFKDRRKFTLMADPKLEGNYPVKALYQALAVAAMCLQEEANTRPLISDVVTALEYLAVDKNVDADVENNSESGSDSVSVSGSGSASPDRSSDEDNDNVESDDR 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42595380 42598176 - evm.model.ptg000003l.1011 HCH6g0781 546275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0781 402 FunFam probable serine/threonine-protein kinase RLCKVII 50 154 - -
HCH6g0781 402 Gene3D Transferase(Phosphotransferase) domain 1 155 377 - -
HCH6g0781 402 Gene3D Phosphorylase Kinase; domain 1 62 154 - -
HCH6g0781 402 MobiDBLite consensus disorder prediction 366 387 - -
HCH6g0781 402 FunFam Serine/threonine-protein kinase PBS1 155 371 - -
HCH6g0781 402 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0781 402 PANTHER OS07G0668900 PROTEIN 31 369 - -
HCH6g0781 402 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524(InterPro)
HCH6g0781 402 SUPERFAMILY Protein kinase-like (PK-like) 62 350 IPR011009 -
HCH6g0781 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0781 402 Pfam Protein kinase domain 79 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0781 402 MobiDBLite consensus disorder prediction 363 402 - -
HCH6g0781 402 CDD STKc_IRAK 84 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0781 HCH-Chr6:42595380 HCH6g1669 HCH-Chr6:49554733 4.80E-137 dispersed
HCH6g0781 HCH-Chr6:42595380 HCH7g1120 HCH-Chr7:43960087 8.00E-140 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81576 PF00069 Pkinase 4.10E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0781 - - - 0.0