Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH6g0793 | ATGTCTTCTTCCTCGTATCATCTCCCTCCAAAACCTTTCCTTTCAGACAAATCCAACCTCTGTTTTCCATCACATCAAAACCCATTTCCCTTTTCCCCATTCACTCTCTCTACTAAATCTCCAAAAACATTCTCAATCCAATGCCGAATTCGCCAACTCCGATCCCGTATCGATTCCATAAAAAACACCCAAAAAATCACCGAAGCCATGAAACTCGTCGCCGTCGCAAGAGTCCGACGAGCCCAAGAAGCCGTAATCAACAGCCGCCCCTTCTCCAAAACCCTAATTGAGTTTCTCTATTACATCAACCAACAACTCCAACTCCAGGGAGACGACATAGACTTCCCTTTATCCAATACCCGACCCGTAAAAAACGTCGCCCTTGTCGTTATCTCCGGCGACCGCGGCCTGTGTGGGGGTTTCAATAATTCAATAACGAAAAAGGCAGAGACCCGTTTGTCGGAATTGAGAAATCTTGGTTTGGATTATACCTTAATCAGTGTTGGAAAAAAGGGTAATTCGTATTTCAAGAGAAGGGGTAGTAATGTTTTAGTTGATAAGTTCATTGAAAGAGATTCATTCCCTACTGCGAAAGAAGCTCAGGTAATTTCAGACATTGTGTTTTCATTGTTTATTAGTGAAGAAGTTGATAAAGTTGAGATTGTTTATTCTAAATTTGTGTCATTGGTTAAATCTGAGCCTGTGATTCAAACTTTACTTCCATTCTTGTCTAAAAGAGAAGTTTTCGATGTTAAAGGGAATTGTGTTGATGCAGTGGATGATGAGTTGTTTAGATTGACAAGTAAGGATGGGAAATTGAGTGTAGAGAGGGAGAGAGTTGGGATAAAGAAGGGTGAAATTTCACCACTTTTGGAATTTGAGCAAGACCCTGTTCAGATTTTGGATGCTATGATGCCTCTTTATTTGAATAGTCAGATATTAAGGGCATTGCAGGAATCAGTTGCTAGTGAGCTAGCTGCTAGGATGAATGCTATGAGTAGTGCGACGGATAACGCGGTTGAGCTGAAGAAGTCTCTTTCGATTAGGTATAATAGAGAAAGACAAGCTAAAATTACTGGAGAGTTGTTGGAGATTGTTGCTGGAGCTGAGGCTCTCAAGGATTTTGATTAG | 1131 | 41.03 | MSSSSYHLPPKPFLSDKSNLCFPSHQNPFPFSPFTLSTKSPKTFSIQCRIRQLRSRIDSIKNTQKITEAMKLVAVARVRRAQEAVINSRPFSKTLIEFLYYINQQLQLQGDDIDFPLSNTRPVKNVALVVISGDRGLCGGFNNSITKKAETRLSELRNLGLDYTLISVGKKGNSYFKRRGSNVLVDKFIERDSFPTAKEAQVISDIVFSLFISEEVDKVEIVYSKFVSLVKSEPVIQTLLPFLSKREVFDVKGNCVDAVDDELFRLTSKDGKLSVERERVGIKKGEISPLLEFEQDPVQILDAMMPLYLNSQILRALQESVASELAARMNAMSSATDNAVELKKSLSIRYNRERQAKITGELLEIVAGAEALKDFD | 376 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 42700077 | 42701207 | + | evm.model.ptg000003l.999 | HCH6g0793 | 546287 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH6g0793 | 376 | FunFam | ATP synthase gamma chain | 116 | 243 | - | - | |
| HCH6g0793 | 376 | FunFam | ATP synthase gamma chain, chloroplastic | 48 | 117 | - | - | |
| HCH6g0793 | 376 | NCBIfam | ATP synthase F1 subunit gamma | 50 | 372 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| HCH6g0793 | 376 | Hamap | ATP synthase gamma chain [atpG]. | 47 | 372 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| HCH6g0793 | 376 | Gene3D | - | 115 | 243 | - | - | |
| HCH6g0793 | 376 | ProSitePatterns | ATP synthase gamma subunit signature. | 358 | 371 | IPR023632 | - | |
| HCH6g0793 | 376 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 277 | 372 | - | - | |
| HCH6g0793 | 376 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 48 | 114 | - | - | |
| HCH6g0793 | 376 | SUPERFAMILY | ATP synthase (F1-ATPase), gamma subunit | 49 | 372 | IPR035968 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| HCH6g0793 | 376 | FunFam | ATP synthase gamma chain, chloroplastic | 269 | 372 | - | - | |
| HCH6g0793 | 376 | PANTHER | ATP SYNTHASE GAMMA CHAIN | 1 | 372 | IPR000131 | GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER) | |
| HCH6g0793 | 376 | PRINTS | ATP synthase gamma subunit signature | 350 | 371 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| HCH6g0793 | 376 | PRINTS | ATP synthase gamma subunit signature | 319 | 338 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| HCH6g0793 | 376 | PRINTS | ATP synthase gamma subunit signature | 123 | 142 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| HCH6g0793 | 376 | PRINTS | ATP synthase gamma subunit signature | 217 | 234 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| HCH6g0793 | 376 | Pfam | ATP synthase | 50 | 372 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| HCH6g0793 | 376 | CDD | F1-ATPase_gamma | 50 | 369 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH14g0815 | HCH-Chr14:36078959 | HCH6g0793 | HCH-Chr6:42700077 | 7.00E-122 | dispersed | |
| HCH3g0112 | HCH-Chr3:733701 | HCH6g0793 | HCH-Chr6:42700077 | 1.00E-20 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH6g0793 | K02115 | - | vvi:100264091 | 482.641 |