Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0794 ATGGTTGATCTAGACGTCCAGATTCCAACTGCTTTCGATCCATTTGCCGACGCCAAGGATTCGGATGCCCCCGGAAGCAAAGAATACGTGCATATAAGGGTTCAACAAAGGAATGGGAAGAAGTGTCTGACAACAGTGCAAGGGCTTAAGAAAGAGTTTAGTTATGATAAGATATTGAAGGACCTGAAGAAGGACTTCTGCTGTAACGGCAATGTTGTGCAGGACAAAGAGTTAGGGAAGATAATCCAACTCCAAGGCGATCAGCGGAAGAACGTGTCTCAGTTCCTCGTTCAGGCCGGCCTTGTGAAGAAGGATCAGATCAAGATACATGGTTTCTGA 339 46.02 MVDLDVQIPTAFDPFADAKDSDAPGSKEYVHIRVQQRNGKKCLTTVQGLKKEFSYDKILKDLKKDFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVKKDQIKIHGF 112
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42704891 42705229 + evm.model.ptg000003l.998 HCH6g0794 546288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0794 112 Pfam Translation initiation factor SUI1 27 101 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH6g0794 112 PIRSF Transl_init_SUI1_Euk 1 112 IPR005874 GO:0003743(InterPro)
HCH6g0794 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH6g0794 112 NCBIfam translation initiation factor SUI1 5 112 IPR005874 GO:0003743(InterPro)
HCH6g0794 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743(InterPro)
HCH6g0794 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 112 - GO:0003723(PANTHER)
HCH6g0794 112 SUPERFAMILY eIF1-like 3 112 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
HCH6g0794 112 FunFam Eukaryotic translation initiation factor SUI1 2 112 - -
HCH6g0794 112 Gene3D - 2 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1194 HCH-Chr12:10556551 HCH6g0794 HCH-Chr6:42704891 9.90E-56 dispersed
HCH6g0794 HCH-Chr6:42704891 HCH7g0228 HCH-Chr7:1517254 1.00E-44 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0794 K03113 - csv:101214921 226.483