Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0815 ATGGACCAAGAAAGAAGAAGAAGAAGACTATCTCTTGATGATAATGATCCAACCAGTTTCTCCTTCCTTCCCAACAAAACAATGCCTCTTGATTCTCTCACAGACTTTTCCAACGACTCCATTACTTTGGACCACGAAATCATGGAATCTTCAATCCATCCGCTGATTCTCAACAGCAATGAACATGATCGTGATCTTTTGTTCAATGAAACGGACTTCTTTTCCACCAAAAACTCTGCCCGCGAGAACTTTCAGATCAAGAAAGAGATTCATCAAGTTGATTATATCGTTGAGGACTACCATCGGACTAGTTCAAATCTTTTGACGATGAGCATCAGCAACGAGAAAACTACGTCGAATGATCGGAAATCCTGCAGCACCGATGATAAGAAAACAATGATCGATGGGTTAGCTGAAGTGAAGGCTGAATTTGAGAAGATCAATGAAGAAAATCAAAGGCTAAGATTGATGCTTAAACACGTCAACAAGAATTACCATGCCCTCCAAATACATTTTCTCTCAGTGATGCAACAACAAAAGCTAAAAGTCAAACAAACCTCGGAAAAGAACAAGGTGATTAGTGGCGTACAAGAAGAAAACTATCAAACCCATGCATTAAGCAATACTATTCCAAGATGTTTTATAAATCTGGGTCTAGCAAGTTCTACAAACGAAGAAGAGCCTTCGAATGATTGTTCAGAGACTAAATCCCATGAAATTAGTCCACCTTCTGAAAAGATAACAAACGATGTCGTTTCTCAGAAAAAGTCTAAATTTCACAGCGGAGATAATTTCATTCCAGAAAAGAATCATTGTAAGAAGATCGTTAACGGGGAAGATGATGAAGAATTTGGAGTTGCTTCAAATAAACTTCCAAAAATCGATGAAACTAAAGATTTTGCATCATCGGAAACAATGGCAATGATCAGAAAAGCCCGTGTTTCGGTTCGAGCACGATCGGAAGCACCTACGATATCAGACGGGTGTCAATGGAGGAAATATGGGCAGAAGATGGCGAAAGGGAATCCATGCCCTCGTGCTTATTATCGCTGTACAATGGGAGTCAATTGCCCCGTCCGTAAACAAGTTCAAAGATGTGCAGAAGACCAAACAATCCTCACAACAACCTACGAAGGCCACCACAACCATCCACTTCCGGCGGCCGCCGTAACAATGGCGTCCACGACATCAGCCGCAGTCTCAATGCTGCTCTCAGGATCAACGTCAACCGCCGACCGCAGAGACTTTTTAGCCACAACGACGAATTCTCTCGCAACCCTCTCGGCGTCAGCTCCGTTTCCGACAGTCACATTGGATCTCACTGCTCATAGTCCTGATCTCGACCACCGTACGCCGACTCACCAATCCGGAGTTTCGGGTCTTCTTGGCTATCAACAACCTTCGTTGGCTGAGACGATAAGTGCGGCCACGGCGGCCATTAAGGCGGACCCGAATTTCATGGAGGCTCTAACGGCGGCCATTTCATCAATCATTGACGGTGCCGCTCATCCGAGCAATAAGGCCAGCTAG 1530 44.18 MDQERRRRRLSLDDNDPTSFSFLPNKTMPLDSLTDFSNDSITLDHEIMESSIHPLILNSNEHDRDLLFNETDFFSTKNSARENFQIKKEIHQVDYIVEDYHRTSSNLLTMSISNEKTTSNDRKSCSTDDKKTMIDGLAEVKAEFEKINEENQRLRLMLKHVNKNYHALQIHFLSVMQQQKLKVKQTSEKNKVISGVQEENYQTHALSNTIPRCFINLGLASSTNEEEPSNDCSETKSHEISPPSEKITNDVVSQKKSKFHSGDNFIPEKNHCKKIVNGEDDEEFGVASNKLPKIDETKDFASSETMAMIRKARVSVRARSEAPTISDGCQWRKYGQKMAKGNPCPRAYYRCTMGVNCPVRKQVQRCAEDQTILTTTYEGHHNHPLPAAAVTMASTTSAAVSMLLSGSTSTADRRDFLATTTNSLATLSASAPFPTVTLDLTAHSPDLDHRTPTHQSGVSGLLGYQQPSLAETISAATAAIKADPNFMEALTAAISSIIDGAAHPSNKAS 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 42922149 42925617 - evm.model.ptg000003l.977 HCH6g0815 546309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0815 509 Gene3D WRKY domain 310 387 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0815 509 SUPERFAMILY WRKY DNA-binding domain 318 386 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0815 509 Coils Coil 137 164 - -
HCH6g0815 509 MobiDBLite consensus disorder prediction 229 243 - -
HCH6g0815 509 ProSiteProfiles WRKY domain profile. 320 386 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0815 509 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 119 504 IPR044810 GO:0003700(InterPro)
HCH6g0815 509 MobiDBLite consensus disorder prediction 222 250 - -
HCH6g0815 509 FunFam probable WRKY transcription factor 31 310 387 - -
HCH6g0815 509 SMART WRKY_cls 325 385 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0815 509 Pfam WRKY DNA -binding domain 327 384 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0815 HCH-Chr6:42922149 HCH7g0245 HCH-Chr7:1692539 4.80E-73 dispersed
HCH14g0798 HCH-Chr14:36000667 HCH6g0815 HCH-Chr6:42922149 3.00E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33718 PF03106 WRKY 1.70E-23 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0815 - - - 0.0