Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g0815 | ATGGACCAAGAAAGAAGAAGAAGAAGACTATCTCTTGATGATAATGATCCAACCAGTTTCTCCTTCCTTCCCAACAAAACAATGCCTCTTGATTCTCTCACAGACTTTTCCAACGACTCCATTACTTTGGACCACGAAATCATGGAATCTTCAATCCATCCGCTGATTCTCAACAGCAATGAACATGATCGTGATCTTTTGTTCAATGAAACGGACTTCTTTTCCACCAAAAACTCTGCCCGCGAGAACTTTCAGATCAAGAAAGAGATTCATCAAGTTGATTATATCGTTGAGGACTACCATCGGACTAGTTCAAATCTTTTGACGATGAGCATCAGCAACGAGAAAACTACGTCGAATGATCGGAAATCCTGCAGCACCGATGATAAGAAAACAATGATCGATGGGTTAGCTGAAGTGAAGGCTGAATTTGAGAAGATCAATGAAGAAAATCAAAGGCTAAGATTGATGCTTAAACACGTCAACAAGAATTACCATGCCCTCCAAATACATTTTCTCTCAGTGATGCAACAACAAAAGCTAAAAGTCAAACAAACCTCGGAAAAGAACAAGGTGATTAGTGGCGTACAAGAAGAAAACTATCAAACCCATGCATTAAGCAATACTATTCCAAGATGTTTTATAAATCTGGGTCTAGCAAGTTCTACAAACGAAGAAGAGCCTTCGAATGATTGTTCAGAGACTAAATCCCATGAAATTAGTCCACCTTCTGAAAAGATAACAAACGATGTCGTTTCTCAGAAAAAGTCTAAATTTCACAGCGGAGATAATTTCATTCCAGAAAAGAATCATTGTAAGAAGATCGTTAACGGGGAAGATGATGAAGAATTTGGAGTTGCTTCAAATAAACTTCCAAAAATCGATGAAACTAAAGATTTTGCATCATCGGAAACAATGGCAATGATCAGAAAAGCCCGTGTTTCGGTTCGAGCACGATCGGAAGCACCTACGATATCAGACGGGTGTCAATGGAGGAAATATGGGCAGAAGATGGCGAAAGGGAATCCATGCCCTCGTGCTTATTATCGCTGTACAATGGGAGTCAATTGCCCCGTCCGTAAACAAGTTCAAAGATGTGCAGAAGACCAAACAATCCTCACAACAACCTACGAAGGCCACCACAACCATCCACTTCCGGCGGCCGCCGTAACAATGGCGTCCACGACATCAGCCGCAGTCTCAATGCTGCTCTCAGGATCAACGTCAACCGCCGACCGCAGAGACTTTTTAGCCACAACGACGAATTCTCTCGCAACCCTCTCGGCGTCAGCTCCGTTTCCGACAGTCACATTGGATCTCACTGCTCATAGTCCTGATCTCGACCACCGTACGCCGACTCACCAATCCGGAGTTTCGGGTCTTCTTGGCTATCAACAACCTTCGTTGGCTGAGACGATAAGTGCGGCCACGGCGGCCATTAAGGCGGACCCGAATTTCATGGAGGCTCTAACGGCGGCCATTTCATCAATCATTGACGGTGCCGCTCATCCGAGCAATAAGGCCAGCTAG | 1530 | 44.18 | MDQERRRRRLSLDDNDPTSFSFLPNKTMPLDSLTDFSNDSITLDHEIMESSIHPLILNSNEHDRDLLFNETDFFSTKNSARENFQIKKEIHQVDYIVEDYHRTSSNLLTMSISNEKTTSNDRKSCSTDDKKTMIDGLAEVKAEFEKINEENQRLRLMLKHVNKNYHALQIHFLSVMQQQKLKVKQTSEKNKVISGVQEENYQTHALSNTIPRCFINLGLASSTNEEEPSNDCSETKSHEISPPSEKITNDVVSQKKSKFHSGDNFIPEKNHCKKIVNGEDDEEFGVASNKLPKIDETKDFASSETMAMIRKARVSVRARSEAPTISDGCQWRKYGQKMAKGNPCPRAYYRCTMGVNCPVRKQVQRCAEDQTILTTTYEGHHNHPLPAAAVTMASTTSAAVSMLLSGSTSTADRRDFLATTTNSLATLSASAPFPTVTLDLTAHSPDLDHRTPTHQSGVSGLLGYQQPSLAETISAATAAIKADPNFMEALTAAISSIIDGAAHPSNKAS | 509 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 42922149 | 42925617 | - | evm.model.ptg000003l.977 | HCH6g0815 | 546309 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g0815 | 509 | Gene3D | WRKY domain | 310 | 387 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH6g0815 | 509 | SUPERFAMILY | WRKY DNA-binding domain | 318 | 386 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH6g0815 | 509 | Coils | Coil | 137 | 164 | - | - | |
HCH6g0815 | 509 | MobiDBLite | consensus disorder prediction | 229 | 243 | - | - | |
HCH6g0815 | 509 | ProSiteProfiles | WRKY domain profile. | 320 | 386 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH6g0815 | 509 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 119 | 504 | IPR044810 | GO:0003700(InterPro) | |
HCH6g0815 | 509 | MobiDBLite | consensus disorder prediction | 222 | 250 | - | - | |
HCH6g0815 | 509 | FunFam | probable WRKY transcription factor 31 | 310 | 387 | - | - | |
HCH6g0815 | 509 | SMART | WRKY_cls | 325 | 385 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH6g0815 | 509 | Pfam | WRKY DNA -binding domain | 327 | 384 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH6g0815 | HCH-Chr6:42922149 | HCH7g0245 | HCH-Chr7:1692539 | 4.80E-73 | dispersed | |
HCH14g0798 | HCH-Chr14:36000667 | HCH6g0815 | HCH-Chr6:42922149 | 3.00E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33718 | PF03106 | WRKY | 1.70E-23 | CL0274 | HCH | TF |
Pathway information
