Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0834 ATGAGGAGAGGGAAAGGGGCTACTACTGGGCTTGGGTCTGGGTCAAAAATACCGGTTACCGGCGAACAAATCGGATCGGGTCAAAGAAACATAACAATATCTAAAGAACAAAGATATAGAGGCGTTCGGAAAAGACCATGGGGCAGATTCGCAGCCGAGATCCGTGACCCGTGGAAAAAAACCCGAGTCTGGCTGGGCACTTTTGATTCAGCCGAAGACGCTGCCCGTGCCTACGACGCCGCTGCCCGAACTCTCCGTGGACCCAAAGCTAAAACCAATTTCCCTCCCTCAAACCCTACGTTTTTCGATTTTCCGTACCATCACAACCCTAATCACATCAACGGACGAGATCCATTTTCCGATTCTCGATTTTACGGTCTCGATCATGAGATTAACCCTCAGAGACCCACTTCTAGTAGTTTGAGCTCCACCGTGGAGTCCTTCAGCGGGCCTAGGCCGCCGTCCGCGACTTTGGTAGCGACGTCTTCGGTTTCACGGCGGTTTCCACGGACGCCGCCGCTTGTGCCGGAGGATTGTCATAGTGATTGTGATTCATCGTCGTCCGTGATCGATGATGGAGATACTATGTCGTCTTCGATTCGACGGAAACCGTTGCCTTTTGATCTCAATATGCCGGCGGCCGATGAGGTCGAGTTCGCCGGCGAGGATTTGAGATGTACGGATTTGTGCCTTTGA 696 52.3 MRRGKGATTGLGSGSKIPVTGEQIGSGQRNITISKEQRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPPSNPTFFDFPYHHNPNHINGRDPFSDSRFYGLDHEINPQRPTSSSLSSTVESFSGPRPPSATLVATSSVSRRFPRTPPLVPEDCHSDCDSSSSVIDDGDTMSSSIRRKPLPFDLNMPAADEVEFAGEDLRCTDLCL 231
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 43115039 43115734 + evm.model.ptg000003l.958 HCH6g0834 546328
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0834 231 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0834 231 MobiDBLite consensus disorder prediction 132 168 - -
HCH6g0834 231 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0834 231 SMART rav1_2 38 101 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0834 231 MobiDBLite consensus disorder prediction 130 199 - -
HCH6g0834 231 MobiDBLite consensus disorder prediction 181 195 - -
HCH6g0834 231 FunFam Ethylene-responsive transcription factor 2 37 96 - -
HCH6g0834 231 SUPERFAMILY DNA-binding domain 38 97 IPR016177 GO:0003677(InterPro)
HCH6g0834 231 MobiDBLite consensus disorder prediction 13 32 - -
HCH6g0834 231 MobiDBLite consensus disorder prediction 1 32 - -
HCH6g0834 231 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 195 - -
HCH6g0834 231 CDD AP2 37 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0834 231 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0834 231 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0834 231 Pfam AP2 domain 38 87 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0878 HCH-Chr2:52355929 HCH6g0834 HCH-Chr6:43115039 8.60E-46 dispersed
HCH3g0670 HCH-Chr3:4707334 HCH6g0834 HCH-Chr6:43115039 7.00E-26 dispersed
HCH4g1275 HCH-Chr4:8801897 HCH6g0834 HCH-Chr6:43115039 9.60E-19 dispersed
HCH6g0834 HCH-Chr6:43115039 HCH7g0130 HCH-Chr7:871016 1.20E-23 dispersed
HCH6g0834 HCH-Chr6:43115039 HCH7g0080 HCH-Chr7:530031 9.50E-45 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33719 PF00847 AP2 3.60E-14 CL0081 HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0834 K09286 - sly:100820705 244.202