Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g0834 | ATGAGGAGAGGGAAAGGGGCTACTACTGGGCTTGGGTCTGGGTCAAAAATACCGGTTACCGGCGAACAAATCGGATCGGGTCAAAGAAACATAACAATATCTAAAGAACAAAGATATAGAGGCGTTCGGAAAAGACCATGGGGCAGATTCGCAGCCGAGATCCGTGACCCGTGGAAAAAAACCCGAGTCTGGCTGGGCACTTTTGATTCAGCCGAAGACGCTGCCCGTGCCTACGACGCCGCTGCCCGAACTCTCCGTGGACCCAAAGCTAAAACCAATTTCCCTCCCTCAAACCCTACGTTTTTCGATTTTCCGTACCATCACAACCCTAATCACATCAACGGACGAGATCCATTTTCCGATTCTCGATTTTACGGTCTCGATCATGAGATTAACCCTCAGAGACCCACTTCTAGTAGTTTGAGCTCCACCGTGGAGTCCTTCAGCGGGCCTAGGCCGCCGTCCGCGACTTTGGTAGCGACGTCTTCGGTTTCACGGCGGTTTCCACGGACGCCGCCGCTTGTGCCGGAGGATTGTCATAGTGATTGTGATTCATCGTCGTCCGTGATCGATGATGGAGATACTATGTCGTCTTCGATTCGACGGAAACCGTTGCCTTTTGATCTCAATATGCCGGCGGCCGATGAGGTCGAGTTCGCCGGCGAGGATTTGAGATGTACGGATTTGTGCCTTTGA | 696 | 52.3 | MRRGKGATTGLGSGSKIPVTGEQIGSGQRNITISKEQRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPPSNPTFFDFPYHHNPNHINGRDPFSDSRFYGLDHEINPQRPTSSSLSSTVESFSGPRPPSATLVATSSVSRRFPRTPPLVPEDCHSDCDSSSSVIDDGDTMSSSIRRKPLPFDLNMPAADEVEFAGEDLRCTDLCL | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 43115039 | 43115734 | + | evm.model.ptg000003l.958 | HCH6g0834 | 546328 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g0834 | 231 | Gene3D | AP2/ERF domain | 37 | 96 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH6g0834 | 231 | MobiDBLite | consensus disorder prediction | 132 | 168 | - | - | |
HCH6g0834 | 231 | ProSiteProfiles | AP2/ERF domain profile. | 38 | 95 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH6g0834 | 231 | SMART | rav1_2 | 38 | 101 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH6g0834 | 231 | MobiDBLite | consensus disorder prediction | 130 | 199 | - | - | |
HCH6g0834 | 231 | MobiDBLite | consensus disorder prediction | 181 | 195 | - | - | |
HCH6g0834 | 231 | FunFam | Ethylene-responsive transcription factor 2 | 37 | 96 | - | - | |
HCH6g0834 | 231 | SUPERFAMILY | DNA-binding domain | 38 | 97 | IPR016177 | GO:0003677(InterPro) | |
HCH6g0834 | 231 | MobiDBLite | consensus disorder prediction | 13 | 32 | - | - | |
HCH6g0834 | 231 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
HCH6g0834 | 231 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 22 | 195 | - | - | |
HCH6g0834 | 231 | CDD | AP2 | 37 | 97 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH6g0834 | 231 | PRINTS | Ethylene responsive element binding protein signature | 39 | 50 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH6g0834 | 231 | PRINTS | Ethylene responsive element binding protein signature | 61 | 77 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH6g0834 | 231 | Pfam | AP2 domain | 38 | 87 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH2g0878 | HCH-Chr2:52355929 | HCH6g0834 | HCH-Chr6:43115039 | 8.60E-46 | dispersed | |
HCH3g0670 | HCH-Chr3:4707334 | HCH6g0834 | HCH-Chr6:43115039 | 7.00E-26 | dispersed | |
HCH4g1275 | HCH-Chr4:8801897 | HCH6g0834 | HCH-Chr6:43115039 | 9.60E-19 | dispersed | |
HCH6g0834 | HCH-Chr6:43115039 | HCH7g0130 | HCH-Chr7:871016 | 1.20E-23 | dispersed | |
HCH6g0834 | HCH-Chr6:43115039 | HCH7g0080 | HCH-Chr7:530031 | 9.50E-45 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33719 | PF00847 | AP2 | 3.60E-14 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH6g0834 | K09286 | - | sly:100820705 | 244.202 |