Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0844 ATGGCAATATCAAATCAGAGTGATGACGTCAACGGCGACGTTCAAAACTTTACCGGGACGGGAGATGGCGTCTTCCAATTCGAAAAGCTAAGCCCCCATCATCTTCCCGTAGTCATGGCATCTTCTGATTTATGGATAAAGGAATATAATGAAGCCTCTAAACTTGCCGATGATATCAATGGCATGATTGCTGAAAAAAGTTCCTTTCCTGCATCTGGACCAGAAGTCCAGCGTCACGCCTCTTCCGTAAGGAGGAAGATCACGATACTCGGGACGAAAGTCGATGGCTTACAGTCCCTTCTGTTGAAGCTTCCTGTAAAGCAGCCCATGTCAGAGAAAGAGAAAAATCGTCTTAAAGACATGCTTGCACAGATGAGATTGAAAGTAAACCAAATGGCTTCAACATTGAATATGTCAAGCTTTGGTAATCGTGACAATTTGCTTGGTCCAGATATTAAACCTGCTGATATCATGAGCAAAACAGTAGGACTTGACAACCAAGGACTTGTCAGTTTTCAAAAACAAATCATGAAGGAGCAAGATGATGGACTTGAGAAGCTGGAGGAGACTGTGATTAGTACAAAACATATAGCTTTAGCAGTGAATCAAGAACTTGATCTTCATACTCGGCTAATTGATGACTTGGACCAACATGTTGATGTTACGGACTCCCGATTAGTGAGGGTGCAGAAGAAACTAGCAATCTTGAACAAGCGAGCCAAGGGTAGCTGCTCTTGCATGGGTATGCTTTTATCTGTGATTGGCATCGTGGTTCTCGTAGCTCTCATTTGGCTGCTCATTAAATTCTTGTAA 813 42.8 MAISNQSDDVNGDVQNFTGTGDGVFQFEKLSPHHLPVVMASSDLWIKEYNEASKLADDINGMIAEKSSFPASGPEVQRHASSVRRKITILGTKVDGLQSLLLKLPVKQPMSEKEKNRLKDMLAQMRLKVNQMASTLNMSSFGNRDNLLGPDIKPADIMSKTVGLDNQGLVSFQKQIMKEQDDGLEKLEETVISTKHIALAVNQELDLHTRLIDDLDQHVDVTDSRLVRVQKKLAILNKRAKGSCSCMGMLLSVIGIVVLVALIWLLIKFL 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43185854 43189513 - evm.model.ptg000003l.948 HCH6g0844 546338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0844 270 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 174 236 IPR000727 -
HCH6g0844 270 Pfam SNARE domain 211 261 IPR000727 -
HCH6g0844 270 Gene3D - 176 238 - -
HCH6g0844 270 PANTHER SYNTAXIN 46 256 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
HCH6g0844 270 FunFam syntaxin-51 isoform X2 176 238 - -
HCH6g0844 270 SUPERFAMILY SNARE fusion complex 165 235 - -
HCH6g0844 270 CDD SNARE_Qc 177 234 - -
HCH6g0844 270 SMART tSNARE_6 169 236 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1219 HCH-Chr12:11447883 HCH6g0844 HCH-Chr6:43185854 2.70E-92 dispersed
HCH6g0844 HCH-Chr6:43185854 HCH12g1197 HCH-Chr12:10572101 7.80E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0844 K08503 - csv:101223140 360.918