Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0848 ATGATGAATTTTAGCATCATGAAGGAGCCTCGTTTTGTGGTCAGGAAGTTTCTAGCGAGGCCTCAACATGAAGGAGTTGGTGCTGTTGTAAGAAGGAGCATTGGAAGGTTTGAGCTTAAGTACTTTGATCCTTTCCTTGCTTTGGATGAGTTTTCTGTTACTGCTCCTGCTGGGTTCCCTGATCATCCACACAGAGGTTTTGAGACAGTGACCTACATGTTACAGGGAGCTGTGAGACATGAAGATTTTGAAGGGCATAAAGGAACAATAGGAGCTGGTGACTTGCAATGGATGACTGCAGGGAAAGGGATTGTTCACTCAGAAATGCCTGCAGCCCAAGGCACCCAAAAGGGCTTACAACTTTGGATTAATCTTTCTTCCAAATACAAAATGATTGAACCAAGGTATCAGGAAATACACAGCAAGGACATACCAGAAGCATCGAAAGATGGAGTAAAAGTCAGGGTGATAGCAGGAGAAGCATTGGGAGCAAAATCTCCAATCTACACCACAACTCCAACCATGTACTTAGACTTCACTCTCCGACCGGGATCTCACCTCGAACAACCGATACCGATGTCGTGGAACGCTTTCGTCTACGTCTTGGAAGGAGAAGGAGTGTTCGGGAGTTTGAAGTCGATGCCCATTACACCCCATCACCTTCTGCTATTAGGTTGTGGGGATGGTTTGGAAGCTTGGAACAAGTCCTCAAAGGTGTTGAGGTTCATATTGGTAGGGGGTGAGCCACTGAATGAGAGTGTTGTGCAGTTGGGACCATTTGTGATGAATACACAAGAAGAGATTGACCAAACTATTGATGATTCTACAAATGGTTTTGAGAAAGCAAGGCATTGGAGATCAGAAGCTTCTCTTAGCCTTGATTTTTAA 888 44.71 MMNFSIMKEPRFVVRKFLARPQHEGVGAVVRRSIGRFELKYFDPFLALDEFSVTAPAGFPDHPHRGFETVTYMLQGAVRHEDFEGHKGTIGAGDLQWMTAGKGIVHSEMPAAQGTQKGLQLWINLSSKYKMIEPRYQEIHSKDIPEASKDGVKVRVIAGEALGAKSPIYTTTPTMYLDFTLRPGSHLEQPIPMSWNAFVYVLEGEGVFGSLKSMPITPHHLLLLGCGDGLEAWNKSSKVLRFILVGGEPLNESVVQLGPFVMNTQEEIDQTIDDSTNGFEKARHWRSEASLSLDF 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43257759 43259473 + evm.model.ptg000003l.944 HCH6g0848 546342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0848 295 Pfam Pirin C-terminal cupin domain 176 277 IPR008778 -
HCH6g0848 295 CDD cupin_pirin_N 28 125 - -
HCH6g0848 295 Gene3D Jelly Rolls 24 274 IPR014710 -
HCH6g0848 295 FunFam pirin 24 160 - -
HCH6g0848 295 CDD cupin_pirin_C 173 249 - -
HCH6g0848 295 Pfam Pirin 30 123 IPR003829 -
HCH6g0848 295 Gene3D Jelly Rolls 145 250 IPR014710 -
HCH6g0848 295 PIRSF Pirin 9 288 IPR012093 -
HCH6g0848 295 PANTHER PIRIN-RELATED 7 288 IPR012093 -
HCH6g0848 295 SUPERFAMILY RmlC-like cupins 11 278 IPR011051 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1237 HCH-Chr12:12052770 HCH6g0848 HCH-Chr6:43257759 6.00E-148 dispersed
HCH5g1246 HCH-Chr5:44313249 HCH6g0848 HCH-Chr6:43257759 1.50E-116 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0848 K06911 - rcu:8277559 511.916