Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g0848 | ATGATGAATTTTAGCATCATGAAGGAGCCTCGTTTTGTGGTCAGGAAGTTTCTAGCGAGGCCTCAACATGAAGGAGTTGGTGCTGTTGTAAGAAGGAGCATTGGAAGGTTTGAGCTTAAGTACTTTGATCCTTTCCTTGCTTTGGATGAGTTTTCTGTTACTGCTCCTGCTGGGTTCCCTGATCATCCACACAGAGGTTTTGAGACAGTGACCTACATGTTACAGGGAGCTGTGAGACATGAAGATTTTGAAGGGCATAAAGGAACAATAGGAGCTGGTGACTTGCAATGGATGACTGCAGGGAAAGGGATTGTTCACTCAGAAATGCCTGCAGCCCAAGGCACCCAAAAGGGCTTACAACTTTGGATTAATCTTTCTTCCAAATACAAAATGATTGAACCAAGGTATCAGGAAATACACAGCAAGGACATACCAGAAGCATCGAAAGATGGAGTAAAAGTCAGGGTGATAGCAGGAGAAGCATTGGGAGCAAAATCTCCAATCTACACCACAACTCCAACCATGTACTTAGACTTCACTCTCCGACCGGGATCTCACCTCGAACAACCGATACCGATGTCGTGGAACGCTTTCGTCTACGTCTTGGAAGGAGAAGGAGTGTTCGGGAGTTTGAAGTCGATGCCCATTACACCCCATCACCTTCTGCTATTAGGTTGTGGGGATGGTTTGGAAGCTTGGAACAAGTCCTCAAAGGTGTTGAGGTTCATATTGGTAGGGGGTGAGCCACTGAATGAGAGTGTTGTGCAGTTGGGACCATTTGTGATGAATACACAAGAAGAGATTGACCAAACTATTGATGATTCTACAAATGGTTTTGAGAAAGCAAGGCATTGGAGATCAGAAGCTTCTCTTAGCCTTGATTTTTAA | 888 | 44.71 | MMNFSIMKEPRFVVRKFLARPQHEGVGAVVRRSIGRFELKYFDPFLALDEFSVTAPAGFPDHPHRGFETVTYMLQGAVRHEDFEGHKGTIGAGDLQWMTAGKGIVHSEMPAAQGTQKGLQLWINLSSKYKMIEPRYQEIHSKDIPEASKDGVKVRVIAGEALGAKSPIYTTTPTMYLDFTLRPGSHLEQPIPMSWNAFVYVLEGEGVFGSLKSMPITPHHLLLLGCGDGLEAWNKSSKVLRFILVGGEPLNESVVQLGPFVMNTQEEIDQTIDDSTNGFEKARHWRSEASLSLDF | 295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 43257759 | 43259473 | + | evm.model.ptg000003l.944 | HCH6g0848 | 546342 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g0848 | 295 | Pfam | Pirin C-terminal cupin domain | 176 | 277 | IPR008778 | - | |
HCH6g0848 | 295 | CDD | cupin_pirin_N | 28 | 125 | - | - | |
HCH6g0848 | 295 | Gene3D | Jelly Rolls | 24 | 274 | IPR014710 | - | |
HCH6g0848 | 295 | FunFam | pirin | 24 | 160 | - | - | |
HCH6g0848 | 295 | CDD | cupin_pirin_C | 173 | 249 | - | - | |
HCH6g0848 | 295 | Pfam | Pirin | 30 | 123 | IPR003829 | - | |
HCH6g0848 | 295 | Gene3D | Jelly Rolls | 145 | 250 | IPR014710 | - | |
HCH6g0848 | 295 | PIRSF | Pirin | 9 | 288 | IPR012093 | - | |
HCH6g0848 | 295 | PANTHER | PIRIN-RELATED | 7 | 288 | IPR012093 | - | |
HCH6g0848 | 295 | SUPERFAMILY | RmlC-like cupins | 11 | 278 | IPR011051 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g1237 | HCH-Chr12:12052770 | HCH6g0848 | HCH-Chr6:43257759 | 6.00E-148 | dispersed | |
HCH5g1246 | HCH-Chr5:44313249 | HCH6g0848 | HCH-Chr6:43257759 | 1.50E-116 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH6g0848 | K06911 | - | rcu:8277559 | 511.916 |