Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0854 ATGAATTCAACGTCAGACACGGCCGACTCCGAACAGTTTATCGAAGTGGATCCGAACAATCGTTACGGTCGGTATGACGAGTTGCTCGGTTGTGGCGCTGTGAAGAAAGTATACCGAGCGTTTGATCAAGAAGAAGGCATTGAAGTAGCATGGAACCAAGTGAAATTAAGCAACTTTTCAAACGATCTCTCCATGGTTGAGAGGATATATTCGGAGGTTACTTTGCTTAGAACCCTAAAAAACAAGAACATCATTACCTTGTATGATGTTTGGCTGGACAAAGCCAAAAGGACATTGAATTTCATCACTGAGGTTTGTACGAGTGGGAATTTGAGAGAATACAGAAAGAAACACAGACATGTTTCTTTGAAGGCTTTGAAGAAGTGGTCAAAGCAGATTCTACAGGGTTTAGATTATTTGCATATGCACGAACCCTGTGTTATTCATAGAGATCTCAACTGTAGCAATCTCTTTGTCAATGGGAATGTTGGCAAGGTGAAGATTGGTGATTTGGGTTTGGCAGCAACAGTGGGGAAGAGCCACTCGGCTCATTCAGTGCTTGGGACACCAGAATACATGGCACCAGAGCTCTATGAAGAAAATTACACAGAACTTGTAGACATATATTCATTTGGAATGTGCTTGCTTGAAATGGTGACTTTGGAAATTCCGTATAGTGAATGTGACAATGTTGTCAAGATATACAAGAAAGTGACATCAGGGATCAAGCCTCAAGCTCTTGACAAGGTCAAGAACCCTGAGGTCAAGGCTTTTATTGAGAAGTGTCTTGCTCATCGGGACATTCGGCCCTCCGCCAGCGAGCTTCTCAACAACCCGTTTTTCAGTGAAATCGATGATGACGAAAACGAAGAAAGAAGATAG 882 42.52 MNSTSDTADSEQFIEVDPNNRYGRYDELLGCGAVKKVYRAFDQEEGIEVAWNQVKLSNFSNDLSMVERIYSEVTLLRTLKNKNIITLYDVWLDKAKRTLNFITEVCTSGNLREYRKKHRHVSLKALKKWSKQILQGLDYLHMHEPCVIHRDLNCSNLFVNGNVGKVKIGDLGLAATVGKSHSAHSVLGTPEYMAPELYEENYTELVDIYSFGMCLLEMVTLEIPYSECDNVVKIYKKVTSGIKPQALDKVKNPEVKAFIEKCLAHRDIRPSASELLNNPFFSEIDDDENEERR 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43323722 43324804 - evm.model.ptg000003l.938 HCH6g0854 546348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0854 293 CDD STKc_WNK 21 281 - -
HCH6g0854 293 FunFam Probable serine/threonine-protein kinase WNK1 8 104 - -
HCH6g0854 293 SUPERFAMILY Protein kinase-like (PK-like) 26 288 IPR011009 -
HCH6g0854 293 Gene3D Transferase(Phosphotransferase) domain 1 106 287 - -
HCH6g0854 293 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 282 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
HCH6g0854 293 Gene3D Phosphorylase Kinase; domain 1 7 104 - -
HCH6g0854 293 FunFam probable serine/threonine-protein kinase WNK9 106 287 - -
HCH6g0854 293 ProSiteProfiles Protein kinase domain profile. 23 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0854 293 Pfam Protein kinase domain 26 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0854 HCH-Chr6:43323722 HCH8g0180 HCH-Chr8:6924322 6.50E-99 dispersed
HCH6g0854 HCH-Chr6:43323722 HCH6g0855 HCH-Chr6:43362482 1.40E-157 tandem
HCH2g0669 HCH-Chr2:50484988 HCH6g0854 HCH-Chr6:43323722 3.20E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81578 PF00069 Pkinase 1.80E-52 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0854 K08867 - csv:101221172 486.108