Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0855 ATGATGCCTACTGCAATGATGAATTCAAGGTCGGACAAGGTTGATTCCGAACAGTTTATCGAAGTTGATCCGAACAACCGTTACGGTCGGTATGATGAGTTGCTCGGTTGCGGCGCTGTGAAGAAGGTATACCGAGCATTTGATCAAGAAGAAGGCATAGAAGTAGCATGGAACCAAGTGAAATTAAGCAACTTTTCAAACGATCTCTCCATGGTTGAGAGGATATATTCGGAGGTTACTTTGCTTAGAACCCTAAAAAACAAGAACATCATTGCCTTGTACGATGTGTGGTTGGACAAAGTCAAAAGGACATTGAATTTCATCACTGAGGTTTGTACGAGCGGGAATCTGAGAGAGTACAGAAAGAAACACCGACAGGTTTCTTTGAAGGCTTTGAAGAAGTGGTCAAAGCAGATTCTGCAGGGTTTGGATTATTTGCATATGCACGAGCCTTGTGTTATTCATAGAGATCTCAACTGTAGCAATCTTTTTGTCAATGGGAATGTTGGCAAGGTGAAGATTGGTGATTTGGGTTTGGCAGCAACTGTGGGGAAGAGTCACTCAGCTCATTCAGTGCTTGGGACACCAGAATACATGGCACCTGAGCTTTATGAAGAAAATTACACAGAGCTTGTAGACATATATTCATTTGGAATGTGCTTGCTTGAAATGGTGACCTTGGAAATTCCCTATAGTGAATGTGATAATGTTGCCAAGATATATAGGAAAGTGACCTCAGGGATTAAGCCTCAGGCACTCGACAAGGTCAAGGATCCTGAGGTCAAGGCTTTCATTGAGAAGTGCCTTGTTCATCAGCAAGCTCGGCCCTCCGCCACCGAGCTCCTACATGACCAGTTTTTCAATGATATCGATGATGACGAAAACGAAGATGATGGTGTGTTTTGA 906 43.16 MMPTAMMNSRSDKVDSEQFIEVDPNNRYGRYDELLGCGAVKKVYRAFDQEEGIEVAWNQVKLSNFSNDLSMVERIYSEVTLLRTLKNKNIIALYDVWLDKVKRTLNFITEVCTSGNLREYRKKHRQVSLKALKKWSKQILQGLDYLHMHEPCVIHRDLNCSNLFVNGNVGKVKIGDLGLAATVGKSHSAHSVLGTPEYMAPELYEENYTELVDIYSFGMCLLEMVTLEIPYSECDNVAKIYRKVTSGIKPQALDKVKDPEVKAFIEKCLVHQQARPSATELLHDQFFNDIDDDENEDDGVF 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43362482 43363913 - evm.model.ptg000003l.937 HCH6g0855 546349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0855 301 ProSiteProfiles Protein kinase domain profile. 29 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0855 301 CDD STKc_WNK 27 287 - -
HCH6g0855 301 FunFam Probable serine/threonine-protein kinase WNK1 14 110 - -
HCH6g0855 301 Gene3D Transferase(Phosphotransferase) domain 1 112 293 - -
HCH6g0855 301 Pfam Protein kinase domain 32 287 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0855 301 SUPERFAMILY Protein kinase-like (PK-like) 32 294 IPR011009 -
HCH6g0855 301 Gene3D Phosphorylase Kinase; domain 1 13 110 - -
HCH6g0855 301 FunFam probable serine/threonine-protein kinase WNK9 112 293 - -
HCH6g0855 301 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 15 290 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0669 HCH-Chr2:50484988 HCH6g0855 HCH-Chr6:43362482 2.30E-128 dispersed
HCH6g0855 HCH-Chr6:43362482 HCH6g1589 HCH-Chr6:49078327 1.10E-96 dispersed
HCH6g0854 HCH-Chr6:43323722 HCH6g0855 HCH-Chr6:43362482 1.40E-157 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81579 PF00069 Pkinase 2.30E-52 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0855 K08867 - csv:101221172 471.47