Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH6g0856 | ATGGACCCCACTCACTCCAACTCCGGCACTCACTGGAATTCCGGTGACTCGGAACTCATCGATCCCACTCACGGTCGTCCTTCGCCTAGCTCTGCAGAAGCTTCCTACGGTGGCGCCAAATACAAGCTGATGTCTCCGGCGAAACTTCCGATCTCGAGGTCCCCTTGCATCACTATCCCGCCGGGACTCAGTCCGACTTCGTTTCTAGAATCTCCCGTTTTGCTTACCAATTTGAAGGTAGAGCCTTCTCCGACTACTGGGTCCTTTATGAAGTTCCCCATGGCTCATGACTCTTCTAGTTCAGCTATTTATCCAATAGCCACTGTGGCTTTCTCTAATATAAATACCTCAGATGAAGGAAAATCTAGCTTCTTTGAGTTTAAACCATACGTTGGACCAAATATGGTTCCTGCAGATATGAGTTATCCGAAAGGTGAAGAATCTGCAGAAGTCCAAGTTCAAGGCCAACCTCAAACATTTATCCCTCCACCCTTAACTAAAAGTGAGATGAATGTCTCCTTAAATGATTTGAGTCGATCGTCCCCCATGGATGTGGCTGCCTCCGGGACTGGTACCCCTGATGTTGATGGAGATGATTTCAACCATACTTTGAACTCAAATACCAGGGTTCAATCGTCTCAATCTGATCATAAAGGTGGTGGCGTTCCGGTAGTTTCTGATAGGTTAACTGATGATGGATACAACTGGCGAAAATATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCACGTAGCTATTACAAATGTACACATCCTAACTGCGAAGTGAAAAAGCTCTTTGAACGCTCTCACGATGGACAGATAACTGATATTATCTATAAAGGTACCCATGATCATCCTAAACCTCAGCCAAGTCGGCGATATAGTGCCAGTTCTTCCATGAATGTTCAAGAAGAAGGATCTGATAGGCCTTCACCTTTAACAGGCCAGGATGACAAGTCATGCAGCGGATATGCTCAGACTATACAAACCATCGAGCCAAATGGAACTCTGGAACTACCCCCTGTTGCAAATGATAATACTGCTGAAGGTGCAGGAACCCTGCTGAGCAGGAGTCATGATGATGTTGATGATGATGACCCATTCTCAAAGCGGAGGAAAATGGAAATGGGTGGTTTCGATGTCTCCCCTATGGTTAAGCCAATCAGAGAACCACGTGTTGTGGTCCAAACTTTAAGTGAGGTTGATATACTGGACGATGGCTATCGTTGGCGGAAATATGGCCAAAAGGTAGTGAGAGGAAATCCCAATCCAAGGAGTTATTACAAGTGCACAAATGTTGGATGCCCTGTTAGAAAACACGTGGAAAGAGCATCCCACGACCCAAAAGCTGTTATAACCACATATGAAGGGAAGCATAATCATGATGTCCCCACTGCAAAATCAAGTAGTCATGACATTGTGGGCCCATCAACAATTGCACCACCATCAAGGTATAGATTAGAAGAAACTGATACCATAAGCCTTGATCTTGGCGTTGGCATTGGCGCTGGTGCTGAAAGTAGATCGAATGAATACAGGCAGGCGTTGCACTCTCAACTTGTCGAGAACCAAACTCCAAACGGCAATTTCAACTTCAAACTCATTCAAGAAACGTCAGCCCCGACATACTTTGGTGTTCTAAATAGAGGTACAAACCAACACGGATCAAGAGAGAGTTTGAGCGAAAGCCGTGGGATCGAGATTACTCCGCTAAACCATTCGTCGCACCCTTACCCACAGAGCATGGGAAGAATACTAACAGGTCCTTAA | 1773 | 45.52 | MDPTHSNSGTHWNSGDSELIDPTHGRPSPSSAEASYGGAKYKLMSPAKLPISRSPCITIPPGLSPTSFLESPVLLTNLKVEPSPTTGSFMKFPMAHDSSSSAIYPIATVAFSNINTSDEGKSSFFEFKPYVGPNMVPADMSYPKGEESAEVQVQGQPQTFIPPPLTKSEMNVSLNDLSRSSPMDVAASGTGTPDVDGDDFNHTLNSNTRVQSSQSDHKGGGVPVVSDRLTDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKPQPSRRYSASSSMNVQEEGSDRPSPLTGQDDKSCSGYAQTIQTIEPNGTLELPPVANDNTAEGAGTLLSRSHDDVDDDDPFSKRRKMEMGGFDVSPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKSSSHDIVGPSTIAPPSRYRLEETDTISLDLGVGIGAGAESRSNEYRQALHSQLVENQTPNGNFNFKLIQETSAPTYFGVLNRGTNQHGSRESLSESRGIEITPLNHSSHPYPQSMGRILTGP | 590 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 43373510 | 43378092 | + | evm.model.ptg000003l.936 | HCH6g0856 | 546350 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH6g0856 | 590 | ProSiteProfiles | WRKY domain profile. | 225 | 289 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH6g0856 | 590 | MobiDBLite | consensus disorder prediction | 334 | 368 | - | - | |
| HCH6g0856 | 590 | FunFam | WRKY transcription factor | 217 | 290 | - | - | |
| HCH6g0856 | 590 | MobiDBLite | consensus disorder prediction | 460 | 483 | - | - | |
| HCH6g0856 | 590 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 119 | 472 | IPR044810 | GO:0003700(InterPro) | |
| HCH6g0856 | 590 | SUPERFAMILY | WRKY DNA-binding domain | 397 | 465 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH6g0856 | 590 | Pfam | WRKY DNA -binding domain | 406 | 463 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH6g0856 | 590 | Pfam | WRKY DNA -binding domain | 231 | 287 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH6g0856 | 590 | SUPERFAMILY | WRKY DNA-binding domain | 227 | 289 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH6g0856 | 590 | FunFam | WRKY transcription factor 33 | 392 | 458 | - | - | |
| HCH6g0856 | 590 | Gene3D | WRKY domain | 224 | 290 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH6g0856 | 590 | MobiDBLite | consensus disorder prediction | 570 | 590 | - | - | |
| HCH6g0856 | 590 | MobiDBLite | consensus disorder prediction | 180 | 232 | - | - | |
| HCH6g0856 | 590 | MobiDBLite | consensus disorder prediction | 280 | 322 | - | - | |
| HCH6g0856 | 590 | Gene3D | WRKY domain | 392 | 458 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH6g0856 | 590 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| HCH6g0856 | 590 | MobiDBLite | consensus disorder prediction | 292 | 322 | - | - | |
| HCH6g0856 | 590 | MobiDBLite | consensus disorder prediction | 199 | 219 | - | - | |
| HCH6g0856 | 590 | ProSiteProfiles | WRKY domain profile. | 400 | 465 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH6g0856 | 590 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| HCH6g0856 | 590 | SMART | WRKY_cls | 230 | 288 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH6g0856 | 590 | SMART | WRKY_cls | 405 | 464 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH6g0856 | HCH-Chr6:43373510 | HCH6g0924 | HCH-Chr6:44014255 | 1.30E-85 | dispersed | |
| HCH6g0856 | HCH-Chr6:43373510 | HCH13g0701 | HCH-Chr13:5721942 | 2.90E-74 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33722 | PF03106 | WRKY | 3.40E-25 | CL0274 | HCH | TF |
Pathway information