Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0857 ATGCAAGAACCTTCAAGAAAGAATGTTTCAAATCAATCTTATAGGCTCTATGATCAGCCACAACAAGAACCTGGGTCCTATTATTGGCCTCCTATTAGCAATTTTGACCAAGGCTCATATTCTGATGAGGGAATCCTACAAACTCACTTACCAGCTGAGGCTTTTACCCAGTACAGCAGCCTTGAATCGTACTCGGGAACTAGTACTTACCATCAAAATTCTTCCTCCACTGTTAGCTTAACATCAAATGGAAGCCCTTCACACCAAGAATACCATTCATACCCCTCAGATCCATATCATTCATCTGAAAATAATTTTGGCTCACCTATCAGTAGATCTTGTTCAACAGATGATGATGATTTCAAGCACAAGATTAGGGAGTTGGAGACGGCAATGCTTGGGCCTGATCCAGATAGGCTTGACATCTATTCCATCACAAATCCAGTCAATCCTGTATTACCTGTGCAAGCAGTAGCACGGGAACATGTGACCGAGATGATTACCAGAAAGGATTTGAAAGAGATTCTTTGTGCTTGTGCAAGAGCACTAGTTGAAAATGATATGTTGACCGGAGAATTGTTGGTGTCAGTGTTACGTCAAATGGTCTCAGTTTCTGGTGAGCCAATCCAACGCTTAGGAGCTTACATGTTAGAAGCACTTGTTGCAAGGTCAGCCGCTTCAGGTAGTAAAATCTACCAAGCCCTAAAATGCAAAGAACCTTTAGGTTCTGAGCTTCTCTCATACATGCACAAACTCTATGAAGTTTGCCCTTATTTTAAATTTGGATATCTATCAGCAAATGGGGCTATTGCTGAAGCCATAAAAGATGAAAGTAGAGTTCACATAATTGATTTTCTGGTAGCACAGGGCAATCAGTGGATCACACTAATGCAGGCCCTTGCCAATCGGCCTGGAGGGCCCCCTCAGATTATTATTACTGGCATAGATGATTCCGTTTCATCTTATGCTCGAGGAGGGGGCCTTGAGATTGTAGGGAAAAGGTTGTCAATTTTGGCAGAGTCGTTAAGGGTACCCTTCGAGTTCCGAGGTATCGCAGCCTCTGGTTCTGAAATTCAACTTGAAGATCTGAAAATTCGACCAGGTGAGGCCATTGCTGTGAATTTTTCCTTAGTGCTGCATCATGTGCCGGATGAAAGTGTTGGCAGTCAGAATCACAGGAATAGAATATTAAGGCTGGTCAAGAGCTTGTCTCCAAAAGTTGTGACCCTTGTTGAGCAAGAGTTTAACACCAATACCGCTCCTTTTTTTCCTCGTTTCCTGGAGACATTGAGATATTTCTCTGCGATTTTTGAATCCATAGATGTGACTCTTCCAAGAGAGCACAAGGAGCGGATCAACGTGGAGCAGCACTGTTTAGCTCGAGAAATCGTCAATGTAATTGCGTGTGAGGGTGCTGAAAGAGTGGAGCGGCATGAACTCCTTGGTAAGTGGAGATCGCGATTTCTCATGGCTGGGTTCAAACCATATCCATTAAGTTCCTTTGTCAATGCTACCATTGAGGCCCTGTTAAAGAATTACAGTGAGAAGTACATGCTTGAAGAAAGAGATGGAGCTCTATACCTTGGCTGGTCAGATCAGGACTTAGTTACTTCTAGTGCTTGGATTTGA 1629 43.16 MQEPSRKNVSNQSYRLYDQPQQEPGSYYWPPISNFDQGSYSDEGILQTHLPAEAFTQYSSLESYSGTSTYHQNSSSTVSLTSNGSPSHQEYHSYPSDPYHSSENNFGSPISRSCSTDDDDFKHKIRELETAMLGPDPDRLDIYSITNPVNPVLPVQAVAREHVTEMITRKDLKEILCACARALVENDMLTGELLVSVLRQMVSVSGEPIQRLGAYMLEALVARSAASGSKIYQALKCKEPLGSELLSYMHKLYEVCPYFKFGYLSANGAIAEAIKDESRVHIIDFLVAQGNQWITLMQALANRPGGPPQIIITGIDDSVSSYARGGGLEIVGKRLSILAESLRVPFEFRGIAASGSEIQLEDLKIRPGEAIAVNFSLVLHHVPDESVGSQNHRNRILRLVKSLSPKVVTLVEQEFNTNTAPFFPRFLETLRYFSAIFESIDVTLPREHKERINVEQHCLAREIVNVIACEGAERVERHELLGKWRSRFLMAGFKPYPLSSFVNATIEALLKNYSEKYMLEERDGALYLGWSDQDLVTSSAWI 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43379011 43380639 - evm.model.ptg000003l.935 HCH6g0857 546351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0857 542 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 135 541 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH6g0857 542 MobiDBLite consensus disorder prediction 65 114 - -
HCH6g0857 542 ProSiteProfiles GRAS family profile. 163 542 IPR005202 -
HCH6g0857 542 MobiDBLite consensus disorder prediction 65 115 - -
HCH6g0857 542 MobiDBLite consensus disorder prediction 1 33 - -
HCH6g0857 542 Pfam GRAS domain family 172 541 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1143 HCH-Chr12:9150900 HCH6g0857 HCH-Chr6:43379011 2.20E-138 dispersed
HCH12g1405 HCH-Chr12:36902257 HCH6g0857 HCH-Chr6:43379011 8.70E-116 dispersed
HCH14g0760 HCH-Chr14:35787190 HCH6g0857 HCH-Chr6:43379011 2.80E-151 dispersed
HCH3g1373 HCH-Chr3:51501680 HCH6g0857 HCH-Chr6:43379011 5.70E-56 dispersed
HCH5g0825 HCH-Chr5:6541362 HCH6g0857 HCH-Chr6:43379011 1.90E-58 dispersed
HCH6g0857 HCH-Chr6:43379011 HCH9g0424 HCH-Chr9:2657757 1.30E-55 dispersed
HCH10g0056 HCH-Chr10:469933 HCH6g0857 HCH-Chr6:43379011 4.40E-38 transposed
HCH14g0562 HCH-Chr14:34537490 HCH6g0857 HCH-Chr6:43379011 3.60E-48 transposed
HCH2g0668 HCH-Chr2:50476335 HCH6g0857 HCH-Chr6:43379011 3.40E-186 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33723 PF03514 GRAS 6.70E-128 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0857 K27748 - csv:101220072 816.994