Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0864 ATGGCTTCCACGGCACACTCCCTTTCAAAAACCAAAACCAACATTACTTCCATTGACGATGACCAAGAAAATGAACACTTAGCTTACGCCATGGAATTGGCTAACTTATCTGTGTTACCTATGACTCTTCAAGCAGCTTATGAACTTGGAATCTTTGAGATCTTAGCTAAAGCTGGTCCTGGAGCTAAGCTCTCTCCCACTGATATAGCAACAAGGCTGGCTGCAGCAAACCCTAATGCTGCATCCATGCTTGATCGGATCCTAAGGCTTCTAGCTACTCATTCAGTGCTTGCTTGTTCTGTTGCTGATAATGATGAGCTTGAAGGGAATGGAAATCTGCAAAGAGTTTATAGCTTATTGCCCGTTTCTAAGTATTATGTTGGTAATGGAGATGGTGTCTCTTTGGGTCCGATTATTTCTTTGTTTCAAGATAAAGTCCTCTTGGACAGCTGGTCTGAGCTGAAAAATGCAGTTCTTGACGGAGGAATTCCTTTCAACAGGGTTCATGGAACACATGCCTTTGAATATCCTGAACTGGACCCAAGATTCAATAAAGCTTTCAACACAGCAATGTTAAATATCACAACCATTGCCATGAAAAAGATCGTCGAGTGCTACGAAGGTTTCGCGAATCTGAATCAACTCGTTGATGTTGGTGGTGGATTAGGAGTCACCCTTAAAATCATAACTTCTAAATACCCTTCAATCAAGGGAATCAACTTTGATTTGCCTCATGTCATTCAACATGCCCCTCCCTATCCTGGTGTAGAACATGTGGGAGGAGACATGTTTGAGAGTGTTCCAAAAGGAGATGCTGTTTTTATGAAATGGATACTACATGATTGGAGTGATGAGCATTGCCTCAAGTTGCTGAAGAATTGCTATGCTGCAATCCCAGATGATGGAAAGGTAATCGCCGTGGAGTTTGTTTTTCCGATCACTCCTGAGACATCTTCTTCCATGAAAGTTGTTTCTCAGGCTGATGTGCTTATGATGACACAAAATCCAGGAGGAAAGGAGAGGAACCGAGGCGAATTCAGAGCCCTCGCAACCAACGCCGGGTTTAGCGATGTCAAATTCCAAGGTTTTGTATGTAATCTCTGGATTATGGAGTTCTTGAAATGA 1125 42.58 MASTAHSLSKTKTNITSIDDDQENEHLAYAMELANLSVLPMTLQAAYELGIFEILAKAGPGAKLSPTDIATRLAAANPNAASMLDRILRLLATHSVLACSVADNDELEGNGNLQRVYSLLPVSKYYVGNGDGVSLGPIISLFQDKVLLDSWSELKNAVLDGGIPFNRVHGTHAFEYPELDPRFNKAFNTAMLNITTIAMKKIVECYEGFANLNQLVDVGGGLGVTLKIITSKYPSIKGINFDLPHVIQHAPPYPGVEHVGGDMFESVPKGDAVFMKWILHDWSDEHCLKLLKNCYAAIPDDGKVIAVEFVFPITPETSSSMKVVSQADVLMMTQNPGGKERNRGEFRALATNAGFSDVKFQGFVCNLWIMEFLK 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43455002 43457243 - evm.model.ptg000003l.928 HCH6g0864 546358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0864 374 FunFam Caffeic acid 3-O-methyltransferase 8 126 - -
HCH6g0864 374 Pfam Dimerisation domain 41 92 IPR012967 GO:0046983(InterPro)
HCH6g0864 374 SUPERFAMILY Winged helix DNA-binding domain 21 129 IPR036390 -
HCH6g0864 374 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 372 IPR029063 -
HCH6g0864 374 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 374 IPR016461 GO:0008168(InterPro)
HCH6g0864 374 PIRSF O-mtase 7 374 IPR016461 GO:0008168(InterPro)
HCH6g0864 374 Gene3D Vaccinia Virus protein VP39 128 374 IPR029063 -
HCH6g0864 374 Gene3D - 8 126 IPR036388 -
HCH6g0864 374 PANTHER O-METHYLTRANSFERASE 28 359 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
HCH6g0864 374 Pfam O-methyltransferase domain 151 356 IPR001077 GO:0008171(InterPro)
HCH6g0864 374 FunFam Caffeic acid O-methyltransferase 127 374 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0864 HCH-Chr6:43455002 HCH6g0866 HCH-Chr6:43488373 6.90E-170 dispersed
HCH6g0861 HCH-Chr6:43421666 HCH6g0864 HCH-Chr6:43455002 2.40E-116 proximal
HCH6g0862 HCH-Chr6:43433050 HCH6g0864 HCH-Chr6:43455002 1.40E-56 proximal
HCH6g0864 HCH-Chr6:43455002 HCH6g0865 HCH-Chr6:43464656 2.40E-183 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0864 K13066 - csv:101214916 491.115