Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0866 ATGTCTTCGATGACGGACGTCCCATGCAAAACCAAAACCACGATCATTTCCATTGACGACAACCAAGAAAATGAACACTTCATTTACGCCAAGCAATTGGCTAACTTGTCTGTGTTACCTATGACTCTCAAAGTGGCCTTTGAACTTGGTATCTTTGAGATCTTAGCCAAGGCTGGCCCTGGAGCCAAGCTCTCTCCACCCCAAATAGCAACTGGGCTAGCAACCACGAACCCGGATGCCGCCTCCATGATTGATCGGATGCTCAGGCTTCTAGCCAGTCATGAGGTGGTTGCATGTTCTGTTGCCGATGATGAGCTTGGGAATGGGAATCTGCAAAGAGTTTACAGTCTAACGCCGGTTTCTAAATATTACGTTCGTAATGAAGATGGTGTTTCTTTGGGTCCGGTGGTATCCATGATTCAAGATAAAGTCTTCCTTGATAGCTGGTCTGAGCTGAAAAATGCAGTTCTTGAAGGAGGAATTCCTTTCAACAGGGTTCATGGAGTTCATGTCTTTGAATATCCTGGACTGGACCCAAGATTCAACCAAGTTTTCAACGCAGCAATGTTCAATGACACAACCATGGCCATGAAAAAGATCGTCGAGTGCTACGAAGGTTTCGCGAATCTGAAGCAACTCGTTGATGTTGGTGGTGGACTAGGAGTCACCCTTAAAATCATAAATTCCAAATACCCTTCAATCAAGGGAATCAACTTTGATCTGCCTCATGTCATTCAGCATGCCCCTTCCTATCCATGTGTAGAACATGTAGGAGGAGACATGTTTGAGAGTGTTCCGAAAGGAGATGTTATTTTCATGAAGTGGATACTACATGATTGGAGTGATGAGCATTGCCTCAAGTTGCTGAAGAACTGTTATGCTGCAATCCCAAATGATGGAAAGGTAATCGCCGTGGAGTCTGTTCTTCCAACCATACCCGAGACCTTCTCTGCCATGAAAGGAATTTTTCAAGTTGATGTGCTTATGATGACTCAACTTCCAGGAGGGAAAGAGAGAACCCGAGACGAATTCAAAGCTCTCGCAACTAAAGCCGGGTTTAGAGATATCAAATTCCAATGTTGTGTACGTAATCTCTGGATTATGGAGATCTTAAAGTGA 1119 44.33 MSSMTDVPCKTKTTIISIDDNQENEHFIYAKQLANLSVLPMTLKVAFELGIFEILAKAGPGAKLSPPQIATGLATTNPDAASMIDRMLRLLASHEVVACSVADDELGNGNLQRVYSLTPVSKYYVRNEDGVSLGPVVSMIQDKVFLDSWSELKNAVLEGGIPFNRVHGVHVFEYPGLDPRFNQVFNAAMFNDTTMAMKKIVECYEGFANLKQLVDVGGGLGVTLKIINSKYPSIKGINFDLPHVIQHAPSYPCVEHVGGDMFESVPKGDVIFMKWILHDWSDEHCLKLLKNCYAAIPNDGKVIAVESVLPTIPETFSAMKGIFQVDVLMMTQLPGGKERTRDEFKALATKAGFRDIKFQCCVRNLWIMEILK 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43488373 43490442 - evm.model.ptg000003l.926 HCH6g0866 546360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0866 372 SUPERFAMILY Winged helix DNA-binding domain 21 127 IPR036390 -
HCH6g0866 372 FunFam Caffeic acid 3-O-methyltransferase 9 124 - -
HCH6g0866 372 Pfam O-methyltransferase domain 149 354 IPR001077 GO:0008171(InterPro)
HCH6g0866 372 PANTHER O-METHYLTRANSFERASE 27 361 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
HCH6g0866 372 FunFam Caffeic acid O-methyltransferase 125 372 - -
HCH6g0866 372 Gene3D Vaccinia Virus protein VP39 125 372 IPR029063 -
HCH6g0866 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 372 IPR016461 GO:0008168(InterPro)
HCH6g0866 372 PIRSF O-mtase 8 372 IPR016461 GO:0008168(InterPro)
HCH6g0866 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 369 IPR029063 -
HCH6g0866 372 Gene3D - 9 124 IPR036388 -
HCH6g0866 372 Pfam Dimerisation domain 41 92 IPR012967 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1355 HCH-Chr11:45377376 HCH6g0866 HCH-Chr6:43488373 2.30E-114 dispersed
HCH11g1356 HCH-Chr11:45382797 HCH6g0866 HCH-Chr6:43488373 3.30E-116 dispersed
HCH2g0807 HCH-Chr2:51673088 HCH6g0866 HCH-Chr6:43488373 1.30E-39 dispersed
HCH6g0864 HCH-Chr6:43455002 HCH6g0866 HCH-Chr6:43488373 6.90E-170 dispersed
HCH6g0866 HCH-Chr6:43488373 HCH7g0434 HCH-Chr7:3186314 9.60E-47 dispersed
HCH6g0865 HCH-Chr6:43464656 HCH6g0866 HCH-Chr6:43488373 2.50E-172 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0866 K13066 - csv:101214916 513.842