Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g0875 | ATGGCGGATTCCGATAACGATTCAGGAGGGGGAGGAGGACATACCTCAGGATCTTACCCTAACGGCGAGAAATCACCTCGCGAGCACGATAGGTTATTGCCGATCGCGAACGTCGGAAGGATTATGAAGAAAGCACTTCCGGGAAGCGCTAAGATTTCGAAAGATGCGAAGGAGACGGTTCAGGAATGCGTTTCTGAATTCATCAGCTTTATCACCGGTGAGGCGTCGGAGAAGTGCCAGAAAGAGAAGCGGAAGACGGTGAACGGCGATGATTTGCTTTGGGCGATGGCGACGTTAGGGTTTGAAGATTATGTCGAGCCTCTCAAGGATTATTTACAGCGGTTCAGGGAGATGGAAGGGGAGAAGGGTACGATAGCGCGTGATAAAGACGGCGGCGGCGGAGGGATCGGTGTCGGTGGTGACGGCGGAGGCGGGATGGGGATGGGGATGACACAGGCTCAGATTTACAGTCAGAATGGGCTGGGCTGGGATGGTAATCATCCTGGGCCTGGGTATTCTACTGGTAGGCCCATGTAG | 537 | 54.0 | MADSDNDSGGGGGHTSGSYPNGEKSPREHDRLLPIANVGRIMKKALPGSAKISKDAKETVQECVSEFISFITGEASEKCQKEKRKTVNGDDLLWAMATLGFEDYVEPLKDYLQRFREMEGEKGTIARDKDGGGGGIGVGGDGGGGMGMGMTQAQIYSQNGLGWDGNHPGPGYSTGRPM | 178 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 43600627 | 43601163 | + | evm.model.ptg000003l.917 | HCH6g0875 | 546369 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g0875 | 178 | FunFam | Nuclear transcription factor Y subunit B-3 | 21 | 137 | - | - | |
HCH6g0875 | 178 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 32 | 96 | IPR003958 | - | |
HCH6g0875 | 178 | SUPERFAMILY | Histone-fold | 30 | 131 | IPR009072 | GO:0046982(InterPro) | |
HCH6g0875 | 178 | PRINTS | CCAAT-binding transcription factor subunit A signature | 79 | 97 | - | - | |
HCH6g0875 | 178 | PRINTS | CCAAT-binding transcription factor subunit A signature | 60 | 78 | - | - | |
HCH6g0875 | 178 | PRINTS | CCAAT-binding transcription factor subunit A signature | 98 | 116 | - | - | |
HCH6g0875 | 178 | Gene3D | Histone, subunit A | 21 | 154 | IPR009072 | GO:0046982(InterPro) | |
HCH6g0875 | 178 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
HCH6g0875 | 178 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 19 | 127 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
HCH6g0875 | 178 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 63 | 79 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g1276 | HCH-Chr13:40675745 | HCH6g0875 | HCH-Chr6:43600627 | 3.10E-40 | dispersed | |
HCH4g0997 | HCH-Chr4:6415358 | HCH6g0875 | HCH-Chr6:43600627 | 9.40E-41 | dispersed | |
HCH6g0875 | HCH-Chr6:43600627 | HCH6g1682 | HCH-Chr6:49628191 | 5.40E-32 | dispersed | |
HCH6g0875 | HCH-Chr6:43600627 | HCH6g0880 | HCH-Chr6:43623709 | 6.40E-33 | proximal | |
HCH2g0653 | HCH-Chr2:50302037 | HCH6g0875 | HCH-Chr6:43600627 | 7.20E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33724 | PF00808 | CBFD_NFYB_HMF | 7.10E-28 | CL0012 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH6g0875 | K08065 | - | mtr:25489147 | 209.149 |