Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0875 ATGGCGGATTCCGATAACGATTCAGGAGGGGGAGGAGGACATACCTCAGGATCTTACCCTAACGGCGAGAAATCACCTCGCGAGCACGATAGGTTATTGCCGATCGCGAACGTCGGAAGGATTATGAAGAAAGCACTTCCGGGAAGCGCTAAGATTTCGAAAGATGCGAAGGAGACGGTTCAGGAATGCGTTTCTGAATTCATCAGCTTTATCACCGGTGAGGCGTCGGAGAAGTGCCAGAAAGAGAAGCGGAAGACGGTGAACGGCGATGATTTGCTTTGGGCGATGGCGACGTTAGGGTTTGAAGATTATGTCGAGCCTCTCAAGGATTATTTACAGCGGTTCAGGGAGATGGAAGGGGAGAAGGGTACGATAGCGCGTGATAAAGACGGCGGCGGCGGAGGGATCGGTGTCGGTGGTGACGGCGGAGGCGGGATGGGGATGGGGATGACACAGGCTCAGATTTACAGTCAGAATGGGCTGGGCTGGGATGGTAATCATCCTGGGCCTGGGTATTCTACTGGTAGGCCCATGTAG 537 54.0 MADSDNDSGGGGGHTSGSYPNGEKSPREHDRLLPIANVGRIMKKALPGSAKISKDAKETVQECVSEFISFITGEASEKCQKEKRKTVNGDDLLWAMATLGFEDYVEPLKDYLQRFREMEGEKGTIARDKDGGGGGIGVGGDGGGGMGMGMTQAQIYSQNGLGWDGNHPGPGYSTGRPM 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43600627 43601163 + evm.model.ptg000003l.917 HCH6g0875 546369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0875 178 FunFam Nuclear transcription factor Y subunit B-3 21 137 - -
HCH6g0875 178 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
HCH6g0875 178 SUPERFAMILY Histone-fold 30 131 IPR009072 GO:0046982(InterPro)
HCH6g0875 178 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
HCH6g0875 178 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
HCH6g0875 178 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
HCH6g0875 178 Gene3D Histone, subunit A 21 154 IPR009072 GO:0046982(InterPro)
HCH6g0875 178 MobiDBLite consensus disorder prediction 1 31 - -
HCH6g0875 178 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 19 127 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
HCH6g0875 178 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1276 HCH-Chr13:40675745 HCH6g0875 HCH-Chr6:43600627 3.10E-40 dispersed
HCH4g0997 HCH-Chr4:6415358 HCH6g0875 HCH-Chr6:43600627 9.40E-41 dispersed
HCH6g0875 HCH-Chr6:43600627 HCH6g1682 HCH-Chr6:49628191 5.40E-32 dispersed
HCH6g0875 HCH-Chr6:43600627 HCH6g0880 HCH-Chr6:43623709 6.40E-33 proximal
HCH2g0653 HCH-Chr2:50302037 HCH6g0875 HCH-Chr6:43600627 7.20E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33724 PF00808 CBFD_NFYB_HMF 7.10E-28 CL0012 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0875 K08065 - mtr:25489147 209.149