Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0880 ATGAACATGTTGCTGACAACAAACAAGTCGCCTCCCACCAGCAACAGTTCAAATCCCAACAACCACCACCTCACTAACGGCAGAAGCACCACCACAAACTCCTCAGCCACCGTTACCGCAGCTGCCACCAACAACAACAATGACCAGAGCCAGCAGTGTGTTGTGCGGGAGCAAGACCAGTACATGCCTATAGCCAATGTGATACGCATCATGCGGCGAATCTTACCTTCCCATGCAAAAATATCAGACGACGCCAAGGAGACTATCCAAGAATGTGTCTCTGAGTACATCAGCTTCATCACTGGTGAGGCCAACGAGCGCTGCCAGCGGGAGCAGCGCAAGACCGTCACAGCAGAGGACGTCCTTTGGGCCATGGGAAAATTGGGCTTCGACGACTACATCGAGCCTCTGACTGTGTTTCTCAACCGTTATCGTGAGTCCGAGAGCGACCGAATCCGAACAGAGCCCATTTTGAGGCGAACTGTAGATTATGGACCACAAATGGGTATGTTGCCGCCATACGGGCAGGCCTTTCAAATGGGCCATGTTCCGCCGGGGATGTTTGATGCAATGGGTGGATACTACGGCGGAGGAGCGGGTGGTGGTCCGTCTGCTGCCAACGGTAACCAGCTCTGA 636 53.77 MNMLLTTNKSPPTSNSSNPNNHHLTNGRSTTTNSSATVTAAATNNNNDQSQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRTVDYGPQMGMLPPYGQAFQMGHVPPGMFDAMGGYYGGGAGGGPSAANGNQL 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43623709 43624344 + evm.model.ptg000003l.912 HCH6g0880 546374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0880 211 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
HCH6g0880 211 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
HCH6g0880 211 PRINTS CCAAT-binding transcription factor subunit A signature 127 145 - -
HCH6g0880 211 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 42 151 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
HCH6g0880 211 SUPERFAMILY Histone-fold 58 151 IPR009072 GO:0046982(InterPro)
HCH6g0880 211 FunFam Nuclear transcription factor Y subunit B-6 50 162 - -
HCH6g0880 211 Gene3D Histone, subunit A 28 161 IPR009072 GO:0046982(InterPro)
HCH6g0880 211 MobiDBLite consensus disorder prediction 1 35 - -
HCH6g0880 211 ProSitePatterns NF-YB/HAP3 subunit signature. 92 108 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0880 211 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 62 125 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0880 HCH-Chr6:43623709 HCH6g1682 HCH-Chr6:49628191 4.00E-26 dispersed
HCH6g0875 HCH-Chr6:43600627 HCH6g0880 HCH-Chr6:43623709 6.40E-33 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33725 PF00808 CBFD_NFYB_HMF 2.40E-25 CL0012 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0880 K08065 - csv:116402762 317.005