Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0882 ATGCATCCAAAAAAGCTTCTTGCTTTCTCATTCTTCTTCTTCTTCTTCATTTCCAAGACTTCCATTTCCGCAGAAACTGTAAGTTTCGATTTCACTTCTTTCAACATCAGAAACCTCACTCTCCTCGGCGATTCCCATCTCCGGGACGGCGTTATCGGGCTCACCCGTGAGCTCGGCGTGCCGTCCTCAAGCGCCGGCACCGTAATTTACAACAACCCCATTTCATTTTTCGATAAAGAAACTAACTTTACAGCTTCTTTTTCAACAAGATTCTCTTTTTCCATCAACAATGCAAACCCTAGCTCTTTTGGTGATGGATTGTCTTTCTTTATTTCGCCTGATAATCAAACCCTTGGAAGCCCTGGTGGCTATTTGGGTCTTGTTAATTCCTCTCAATTAACCAAAAACAAATTTGTTGCTATTGAATTTGATACTCGTCTTGATTCTTATTTCAATGATCCAGATGGCCATCATGTTGGTTTTGATATTGAAAGTCTTGTTTCTATTAAAACTGCTAATCCAATCTTGCAGGGAGTGGATCTTAAAAGTGGGAAATTTATTACAGCTTGGATTGAGTATAAGAATGATCAATCAAAGCTGAGAGTTTTTTTGAGTAATTCTAATTCTAAGCCTGCAATGCCTCTATTGAGTGTGGATATTGATCTTTCTGAGTATCTTAAAGAGGCTATGTATGTGGGGTTTTCAGGATCAACTGAAGGAAGTACTGAGGTTCATTTGATTGAGAATTGGAGTTTTTTAACTTCAGGGTTTGTTCCTGCTAGACCAAGATTGACTCCTCATAATGTTTCTGATAGTTCTGTGATTATATCACCTACCATTCCTATGTCTGATTCCACTATTAAACATCATAATAGGCTTGGGTTGGGACTTGGGATTGCTGGCCCGGCTTTCTTTTGTGCGGTTATTGCGGCATTTGGTTTTGTTTTGCTTAGGAAATGGAGGGAAATTAATTCACAGAAGAATTTCAAGGCAGAGCTTTTGACTGGCCCCAGAGAGTTTAGCTATAGAGAACTGAAAATGGCCACGAAAGGGTTTCATTCGAGTAGGATCATTGGTAATGGAGCGTTTGGAACTGTGTACAAAGCTTTTTGTACCTCGACGGGTATTATTTCGGCTGTTAAAAGATCGAAACACTCACATGAAAGCAAGACCGAATTTCTGGCTGAGTTGTCGATCATAGCTCGTTTGAGGCATAAGAATTTACTTCAGCTCCAAGGTTGGTGTGTTGAGAAGGATGAACTGCTTCTTGTTTATGACTTTATGCCGAATGGGAGTCTTGATAGATTACTTTACCAGGAAACGGAAGAAGCTAACTTCTTAAACTGGTCTCACAGATACAATATTGCTGTTGGATTGGCCTCGGTATTGACATATCTACATCAGGAATGTGAACAGCAAGTCATCCACAGAGATATAAAGACCGGTAACGTACTGCTAGATGGGAATTTCAATGCCAGGTTGGGCGATTTTGGATTGGCAAAGCTTATGGATCATGATAAGAGCCCGGTTTCGACTCTAACTGCAGGAACAATGGGATACCTTGCACCCGAGTATCTTCAGTATGGGAAAGCTACTGAGAAAACCGATGTCTTCAGTTATGGTGTGGTTATCCTTGAAGTGGCCTGTGGAAGGAGGCCAATTGAAAGAGAAGCAGGTACTCAAAAAATGGTCAACTTGGTAGATTGGGTTTGGGGATTGCATTCTGAAGGCAAAATCATTGAAGCAGCTGATAAAAGGTTGAATGGAGAGTTCAGAGAAGAAGATATGAGGAAGCTGTTGCTTGTGGGATTGAGCTGTGCAAACCCAGATAGCTCGGCAAGGCCTTCAATAAGGAAAGTCCTACAAATTCTCAACAATGAGGCAGCACCTGTATTTGTACCAAAGATGAAACCAAGTTTAACATTTTCTTGTGGCTTATCACTGACTGTGGATGACATCGTAGATGATGACGAAGAAGAAGAGTGGGAGACCGATACGATCGACGTAAAAGTAGACAGCAACTAA 2025 41.09 MHPKKLLAFSFFFFFFISKTSISAETVSFDFTSFNIRNLTLLGDSHLRDGVIGLTRELGVPSSSAGTVIYNNPISFFDKETNFTASFSTRFSFSINNANPSSFGDGLSFFISPDNQTLGSPGGYLGLVNSSQLTKNKFVAIEFDTRLDSYFNDPDGHHVGFDIESLVSIKTANPILQGVDLKSGKFITAWIEYKNDQSKLRVFLSNSNSKPAMPLLSVDIDLSEYLKEAMYVGFSGSTEGSTEVHLIENWSFLTSGFVPARPRLTPHNVSDSSVIISPTIPMSDSTIKHHNRLGLGLGIAGPAFFCAVIAAFGFVLLRKWREINSQKNFKAELLTGPREFSYRELKMATKGFHSSRIIGNGAFGTVYKAFCTSTGIISAVKRSKHSHESKTEFLAELSIIARLRHKNLLQLQGWCVEKDELLLVYDFMPNGSLDRLLYQETEEANFLNWSHRYNIAVGLASVLTYLHQECEQQVIHRDIKTGNVLLDGNFNARLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATEKTDVFSYGVVILEVACGRRPIEREAGTQKMVNLVDWVWGLHSEGKIIEAADKRLNGEFREEDMRKLLLVGLSCANPDSSARPSIRKVLQILNNEAAPVFVPKMKPSLTFSCGLSLTVDDIVDDDEEEEWETDTIDVKVDSN 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43630711 43632735 + evm.model.ptg000003l.910 HCH6g0882 546376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0882 674 FunFam L-type lectin-domain containing receptor kinase VIII.1 428 642 - -
HCH6g0882 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0882 674 Gene3D Transferase(Phosphotransferase) domain 1 428 642 - -
HCH6g0882 674 SMART serkin_6 352 629 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0882 674 SUPERFAMILY Protein kinase-like (PK-like) 335 643 IPR011009 -
HCH6g0882 674 CDD lectin_legume_LecRK_Arcelin_ConA 27 256 IPR001220 GO:0030246(InterPro)
HCH6g0882 674 FunFam L-type lectin-domain containing receptor kinase VIII.1 316 427 - -
HCH6g0882 674 ProSiteProfiles Protein kinase domain profile. 352 632 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0882 674 Gene3D Phosphorylase Kinase; domain 1 316 427 - -
HCH6g0882 674 FunFam L-type lectin-domain containing receptor kinase VIII.1 25 265 - -
HCH6g0882 674 PANTHER - 31 634 IPR050528 GO:0002229(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
HCH6g0882 674 CDD STKc_IRAK 358 626 - -
HCH6g0882 674 Pfam Legume lectin domain 27 257 IPR001220 GO:0030246(InterPro)
HCH6g0882 674 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 260 IPR013320 -
HCH6g0882 674 Pfam Protein kinase domain 352 622 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0882 674 Gene3D - 24 260 - -
HCH6g0882 674 ProSitePatterns Protein kinases ATP-binding region signature. 358 381 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0269 HCH-Chr11:2444234 HCH6g0882 HCH-Chr6:43630711 1.80E-171 dispersed
HCH6g0882 HCH-Chr6:43630711 HCH7g0798 HCH-Chr7:13980258 2.30E-115 dispersed
HCH6g0882 HCH-Chr6:43630711 HCH11g0171 HCH-Chr11:1731887 8.40E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81580 PF00069 Pkinase 3.30E-51 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0882 - - - 0.0