Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0888 ATGGAAAGTCAGAGGAAAGTAAACGATAGTCAGACGAGTGGGCGGAATTTGCGACCGTCACCTTTGAAGATTACCAAGGCAAGCAAATCTGAGCCGGTTACCCTGAACACATTGCCAAACAGTGCACGAGAGGCTGAATTAAATGAAGTGCTAAATGCTCATCAGCAAGTGTCTGCAAGTTCTTTAGCTGATAATCTTGCATCAAAGCTATATTTGGTTCATAAAAAACAAGCGCCAGTTGATGCGAGTCATGCGGTGAGCGACCCTAGTGAGACACGTGAAGATTGTGCTGATGAAGAAAAATTAACAACAGATCATGGAACCACATCGACTTCTGATAAAATTAGTGATGGAACCAGCTATCACGGCAAGACCAGTGGAGGCACCAAAATCAGTGACCGAGTTGATTTTGTTGAGAGTGGAAAGAGTAGTATTTGTAGGGGTAGCATGAGTAGTGACTTGAGTGATGATAGTACATGTAGCAGCTTAAGCAGTGTTGTGAACAAACCACACAAAGCAAATGATGTACAATGGGAAGCCATACAGGCTGTTCGTGTGAAAGATGGAGTACTCGGGGTGAACCATTTTAGACTTTTAAAGAGGTTGGGTTGTGGGGATATTGGATCTGTCTATCTCTCGGAGTTGAGAGGAACAAAGTGTTATTTTGCAATGAAGGTTATGGACAAAGCTTCTTTAGCTAGTCGGAAAAAACTGCTCCGAGCTCAGACAGAAAGGGAAATACTGCAATCTTTAGACCATCCCTTTTTACCCACCTTGTATACGCATTTTGAAACGGATAAATTTTCTTGTTTGGTGATGGAGTTTTGCCCTGGAGGTGACTTGCATACTCTTCGGCAGAGGCAACCAGGAAAGTACTTTACTGAACAAGCAGTCAAATTCTATGTGGCCGAAGTTCTCCTAGCTCTAGAGTACCTCCACATGCTTGGAATAGTTTACCGTGACCTGAAGCCAGAAAATGTCCTCGTGAGGGAAGATGGCCATATTATGCTTTCCGACTTTGACCTTTCTCTCCGCTGTGCTTTTAGTCCAAGTTTGGTGAAGTCTTCTGCACTCGAGTCTGAAGTATTAAGAAAGAATTCAGTTTATTGTGTCCAACCAGCTTGCATAGAGCCCTCCTGTATCCAGCCATCCTGTATCGTGCCTACGACATGCTTTACACCTCGTCTCCTGTTAGGTAAATCAAAAAAAGATCGAAAGCCCAAAAATGAAGCTGCAAACCAAGTCAGACCACTTCCAGAGCTTAGCGCGGAGCCAACAAATGCTCGCTCAATGTCGTTTGTCGGGACTCATGAATATTTGGCTCCTGAAATTATCAAGGGTGAAGGTCATGGCAGTGCTGTTGATTGGTGGACTTTTGGTATCTTTCTTTATGAACTATTGTTTGGCAAGACTCCTTTTAAAGGATCAGGCAATCGTGCTACTCTGTTCAATGTTGTCGGTCAGCCACTACGATTCCCCGAGGCACCGGTGGTTAGCTTTTCAGCAAGGGACCTGATAAGGGGCTTGCTGGTTAAAGAGCCCCAACATCGGTTGGCATACAAGCGTGGAGCAACAGAGATCAAGCAACATCCCTTCTTTGAAGGTGTTAATTGGGCTTTGATTCGGTGTGCTAGCCCCCCTGAGATTCCAAGAGCAGTAGAATACGAAAACATTCCTGGCATGACAGCAACAACAAAAGTTAAAGCTGCTGCTGTTGCTCACCCTGATGAAAGTAACTATTTGGAGTTTGATTTCTTTTAA 1761 44.18 MESQRKVNDSQTSGRNLRPSPLKITKASKSEPVTLNTLPNSAREAELNEVLNAHQQVSASSLADNLASKLYLVHKKQAPVDASHAVSDPSETREDCADEEKLTTDHGTTSTSDKISDGTSYHGKTSGGTKISDRVDFVESGKSSICRGSMSSDLSDDSTCSSLSSVVNKPHKANDVQWEAIQAVRVKDGVLGVNHFRLLKRLGCGDIGSVYLSELRGTKCYFAMKVMDKASLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKYFTEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAFSPSLVKSSALESEVLRKNSVYCVQPACIEPSCIQPSCIVPTTCFTPRLLLGKSKKDRKPKNEAANQVRPLPELSAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFSARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEIPRAVEYENIPGMTATTKVKAAAVAHPDESNYLEFDFF 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43684662 43686991 - evm.model.ptg000003l.904 HCH6g0888 546382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0888 586 CDD STKc_phototropin_like 195 551 - -
HCH6g0888 586 ProSiteProfiles Protein kinase domain profile. 196 533 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0888 586 SMART serkin_6 196 533 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0888 586 PANTHER FLIPPASE KINASE 1-RELATED 81 564 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH6g0888 586 Gene3D Transferase(Phosphotransferase) domain 1 280 347 - -
HCH6g0888 586 MobiDBLite consensus disorder prediction 108 127 - -
HCH6g0888 586 Gene3D Transferase(Phosphotransferase) domain 1 427 551 - -
HCH6g0888 586 FunFam Serine/threonine-protein kinase D6PK-like 194 279 - -
HCH6g0888 586 MobiDBLite consensus disorder prediction 1 39 - -
HCH6g0888 586 FunFam serine/threonine-protein kinase D6PK-like 280 347 - -
HCH6g0888 586 MobiDBLite consensus disorder prediction 1 19 - -
HCH6g0888 586 Gene3D Phosphorylase Kinase; domain 1 194 279 - -
HCH6g0888 586 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0888 586 FunFam Serine/threonine-protein kinase AGC1-7 426 551 - -
HCH6g0888 586 MobiDBLite consensus disorder prediction 87 107 - -
HCH6g0888 586 SUPERFAMILY Protein kinase-like (PK-like) 171 551 IPR011009 -
HCH6g0888 586 MobiDBLite consensus disorder prediction 78 127 - -
HCH6g0888 586 Pfam Protein kinase domain 430 533 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0888 586 Pfam Protein kinase domain 197 346 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0744 HCH-Chr14:35712754 HCH6g0888 HCH-Chr6:43684662 5.50E-217 dispersed
HCH6g0888 HCH-Chr6:43684662 HCH9g0115 HCH-Chr9:603573 2.50E-187 dispersed
HCH3g0840 HCH-Chr3:6493464 HCH6g0888 HCH-Chr6:43684662 2.10E-96 transposed
HCH10g0432 HCH-Chr10:3449487 HCH6g0888 HCH-Chr6:43684662 2.50E-119 transposed
HCH14g0100 HCH-Chr14:19151352 HCH6g0888 HCH-Chr6:43684662 3.80E-153 transposed
HCH3g1038 HCH-Chr3:14475731 HCH6g0888 HCH-Chr6:43684662 7.90E-224 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81581 PF00069 Pkinase 2.20E-37 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0888 K08286 - vvi:100258297 888.256