Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g0888 | ATGGAAAGTCAGAGGAAAGTAAACGATAGTCAGACGAGTGGGCGGAATTTGCGACCGTCACCTTTGAAGATTACCAAGGCAAGCAAATCTGAGCCGGTTACCCTGAACACATTGCCAAACAGTGCACGAGAGGCTGAATTAAATGAAGTGCTAAATGCTCATCAGCAAGTGTCTGCAAGTTCTTTAGCTGATAATCTTGCATCAAAGCTATATTTGGTTCATAAAAAACAAGCGCCAGTTGATGCGAGTCATGCGGTGAGCGACCCTAGTGAGACACGTGAAGATTGTGCTGATGAAGAAAAATTAACAACAGATCATGGAACCACATCGACTTCTGATAAAATTAGTGATGGAACCAGCTATCACGGCAAGACCAGTGGAGGCACCAAAATCAGTGACCGAGTTGATTTTGTTGAGAGTGGAAAGAGTAGTATTTGTAGGGGTAGCATGAGTAGTGACTTGAGTGATGATAGTACATGTAGCAGCTTAAGCAGTGTTGTGAACAAACCACACAAAGCAAATGATGTACAATGGGAAGCCATACAGGCTGTTCGTGTGAAAGATGGAGTACTCGGGGTGAACCATTTTAGACTTTTAAAGAGGTTGGGTTGTGGGGATATTGGATCTGTCTATCTCTCGGAGTTGAGAGGAACAAAGTGTTATTTTGCAATGAAGGTTATGGACAAAGCTTCTTTAGCTAGTCGGAAAAAACTGCTCCGAGCTCAGACAGAAAGGGAAATACTGCAATCTTTAGACCATCCCTTTTTACCCACCTTGTATACGCATTTTGAAACGGATAAATTTTCTTGTTTGGTGATGGAGTTTTGCCCTGGAGGTGACTTGCATACTCTTCGGCAGAGGCAACCAGGAAAGTACTTTACTGAACAAGCAGTCAAATTCTATGTGGCCGAAGTTCTCCTAGCTCTAGAGTACCTCCACATGCTTGGAATAGTTTACCGTGACCTGAAGCCAGAAAATGTCCTCGTGAGGGAAGATGGCCATATTATGCTTTCCGACTTTGACCTTTCTCTCCGCTGTGCTTTTAGTCCAAGTTTGGTGAAGTCTTCTGCACTCGAGTCTGAAGTATTAAGAAAGAATTCAGTTTATTGTGTCCAACCAGCTTGCATAGAGCCCTCCTGTATCCAGCCATCCTGTATCGTGCCTACGACATGCTTTACACCTCGTCTCCTGTTAGGTAAATCAAAAAAAGATCGAAAGCCCAAAAATGAAGCTGCAAACCAAGTCAGACCACTTCCAGAGCTTAGCGCGGAGCCAACAAATGCTCGCTCAATGTCGTTTGTCGGGACTCATGAATATTTGGCTCCTGAAATTATCAAGGGTGAAGGTCATGGCAGTGCTGTTGATTGGTGGACTTTTGGTATCTTTCTTTATGAACTATTGTTTGGCAAGACTCCTTTTAAAGGATCAGGCAATCGTGCTACTCTGTTCAATGTTGTCGGTCAGCCACTACGATTCCCCGAGGCACCGGTGGTTAGCTTTTCAGCAAGGGACCTGATAAGGGGCTTGCTGGTTAAAGAGCCCCAACATCGGTTGGCATACAAGCGTGGAGCAACAGAGATCAAGCAACATCCCTTCTTTGAAGGTGTTAATTGGGCTTTGATTCGGTGTGCTAGCCCCCCTGAGATTCCAAGAGCAGTAGAATACGAAAACATTCCTGGCATGACAGCAACAACAAAAGTTAAAGCTGCTGCTGTTGCTCACCCTGATGAAAGTAACTATTTGGAGTTTGATTTCTTTTAA | 1761 | 44.18 | MESQRKVNDSQTSGRNLRPSPLKITKASKSEPVTLNTLPNSAREAELNEVLNAHQQVSASSLADNLASKLYLVHKKQAPVDASHAVSDPSETREDCADEEKLTTDHGTTSTSDKISDGTSYHGKTSGGTKISDRVDFVESGKSSICRGSMSSDLSDDSTCSSLSSVVNKPHKANDVQWEAIQAVRVKDGVLGVNHFRLLKRLGCGDIGSVYLSELRGTKCYFAMKVMDKASLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKYFTEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAFSPSLVKSSALESEVLRKNSVYCVQPACIEPSCIQPSCIVPTTCFTPRLLLGKSKKDRKPKNEAANQVRPLPELSAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFSARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEIPRAVEYENIPGMTATTKVKAAAVAHPDESNYLEFDFF | 586 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 43684662 | 43686991 | - | evm.model.ptg000003l.904 | HCH6g0888 | 546382 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g0888 | 586 | CDD | STKc_phototropin_like | 195 | 551 | - | - | |
HCH6g0888 | 586 | ProSiteProfiles | Protein kinase domain profile. | 196 | 533 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH6g0888 | 586 | SMART | serkin_6 | 196 | 533 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH6g0888 | 586 | PANTHER | FLIPPASE KINASE 1-RELATED | 81 | 564 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
HCH6g0888 | 586 | Gene3D | Transferase(Phosphotransferase) domain 1 | 280 | 347 | - | - | |
HCH6g0888 | 586 | MobiDBLite | consensus disorder prediction | 108 | 127 | - | - | |
HCH6g0888 | 586 | Gene3D | Transferase(Phosphotransferase) domain 1 | 427 | 551 | - | - | |
HCH6g0888 | 586 | FunFam | Serine/threonine-protein kinase D6PK-like | 194 | 279 | - | - | |
HCH6g0888 | 586 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
HCH6g0888 | 586 | FunFam | serine/threonine-protein kinase D6PK-like | 280 | 347 | - | - | |
HCH6g0888 | 586 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
HCH6g0888 | 586 | Gene3D | Phosphorylase Kinase; domain 1 | 194 | 279 | - | - | |
HCH6g0888 | 586 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 317 | 329 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH6g0888 | 586 | FunFam | Serine/threonine-protein kinase AGC1-7 | 426 | 551 | - | - | |
HCH6g0888 | 586 | MobiDBLite | consensus disorder prediction | 87 | 107 | - | - | |
HCH6g0888 | 586 | SUPERFAMILY | Protein kinase-like (PK-like) | 171 | 551 | IPR011009 | - | |
HCH6g0888 | 586 | MobiDBLite | consensus disorder prediction | 78 | 127 | - | - | |
HCH6g0888 | 586 | Pfam | Protein kinase domain | 430 | 533 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH6g0888 | 586 | Pfam | Protein kinase domain | 197 | 346 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH14g0744 | HCH-Chr14:35712754 | HCH6g0888 | HCH-Chr6:43684662 | 5.50E-217 | dispersed | |
HCH6g0888 | HCH-Chr6:43684662 | HCH9g0115 | HCH-Chr9:603573 | 2.50E-187 | dispersed | |
HCH3g0840 | HCH-Chr3:6493464 | HCH6g0888 | HCH-Chr6:43684662 | 2.10E-96 | transposed | |
HCH10g0432 | HCH-Chr10:3449487 | HCH6g0888 | HCH-Chr6:43684662 | 2.50E-119 | transposed | |
HCH14g0100 | HCH-Chr14:19151352 | HCH6g0888 | HCH-Chr6:43684662 | 3.80E-153 | transposed | |
HCH3g1038 | HCH-Chr3:14475731 | HCH6g0888 | HCH-Chr6:43684662 | 7.90E-224 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81581 | PF00069 | Pkinase | 2.20E-37 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH6g0888 | K08286 | - | vvi:100258297 | 888.256 |