Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0900 ATGGAGGCTCCCAATTTTTCTCCTTTTTTCTTCATCTTCTTTCTTTTCTCCGTTTTGCAAATTACATCCACCATTGCAGCCAAAAAGTCTTATATTGTTTACTTGGGGGCGCCTTCATATGCTTCTAATACCCCTTCAGAGTTTGATTTCCAAGTCGTTACAGAAACTCATTATGATATATTGAGTACGTCGGTGGGAAGTAAGGAACTGGCAAAGGAAGCAATATTCTACTCATATACCAGAAATATCAATGGGTTTGCAGCCGTACTAGATCCGAAGGAAGCAGAAGATCTCAAGAGTCATCCAAATGTGATATCGGTTCTTGAAAATAAGGAAAGAGAATTACACACAACAAGATCATGGAGCTTTCTTGGTGTAGAGAATGATAATGGAATCATTCGTTCAAACTCTATTTGGAATGCTGCAAAGTTTGGTGAAGATATCATTATAGCCAATATCGACACAGGTGTTTGGCCGGAATCAAAAAGCTTCAGCGACGAAGGGTACGGACCAATCCCATCAAGGTGGCGAGGAATTTGCCAGAAAAGCTCTAACTTCAATTGCAACAGGAAGTTAATCGGAGCGAGGTTTTTCTACAAAGGGTATATCGCCGGCGGCGGTTCTCTCAACGCCAGCCAACTTACCGTAAGAGACGACGAAGGCCATGGAACACACACTCTCTCCACCGCCGGCGGCAATTTCGTCGCCGGAGCTAACGTTTTCAGCTTCGGTAACGGCACTGCGAAAGGCGGTGCCCCCAAAGCCCGTGTCGCCGCCTACAAGATATGCTGGCCTGCACTCTTCTTCGGCGGGTGTTTCGATGCCGATATCCTGGCTGCCTTCGATGCCGCCATTGACGACGGTGTCGATGTTATATCGGCTTCCTTGGGTGGTAGCGCACAAGAATTTTTTGATGATACAATGGCTTTAGCTTCCTTCCATGCCGTTCAGCGAGGCATCCCCGTCGTCTTCTCCGCCGGAAACTCTGGACCGGATGTCGGATCGGTAACAAACGTCGCTCCCTGGCAATTTACCGTTGGAGCGAGCTCAATCGATAGGGATTTTACTAATCACATTGTCCTTGGAAATAAGAAGCTGATCCAGGGTGAAAGCCTTTCTTCTACAGCATTACCACACAACAAATACTTTCCGTTGATCAATGCCCTGGATGCAAAAGCCGATCGTGTCCCTGATAACGATGCCCTAAATTGTTACGACCGAACACTTGATCCCAACAAGGTAAAGGGGAAGATTGTGGTTTGCCGTTCAAACGGCGGATTTTCCATGAGCGCGGGTCATGAGGCTGCTCGAGCAGGTGCCGTTGGGATGATTGCTACTAATGACCAGCAAACGGGTGACCGTCTTATCCCTGAGTTGCACCTCCTTCCAGCTACAGTTATAACATACAGCAGTTCCATATCTCTCTTTGCATATATCAACTCCACCAAGACACCAGTGGCTCACATAAGTAATGTAAGGACTAAATTGGGAGTGAAACCAGCTCCAGTAATGGCTTGGTTCTCGTCCAGAGGTCCCAATACAGTGGAGGAGTCAATCCTCAAGCCTGATATAACAGCACCAGGTGTGAATATACTTGCATCTTTTGCAGCTGGAGCTACGCCAACCCTTATAGACGACGATAAACGACGGATTTCTTTCAGTGTATTAAGTGGGACCTCCATGTCTTGCCCCCATGTTTCTGGAGTTGTAGGCCTTCTCAAGACCCTTTATCCCAAATGGAGCCCCGCTGCTATTAAATCTGCAATCATGACAACAGCCAAAACAAGGAGCAATGACATGCGTTCTATAATGGATTTCAACAAGCTGAAAGCAAGCCCATTGGCATACGGTGCAGGACATATTCATCCAAACAGTGCAATAGACCCTGGCCTCGTTTACGACAATACCATTGAAGACTACTTGAACTTCTTATGTGCTCGAGGCTACAACGAAACACAACTCAAGAGATTCTCTAACAAACCATTCAGCTGTATAAAATCATTCAAAGTAACAGATTTCAACTATCCATCAATCTCAGTTCCCGATTTGAAAATGGGTGTAGCTGTGACAATCAATAGAAGAGTTAAGAATGTGGGAGGTCCGGGCAAGTACGTTGCTCGTGTCAAGGCACCGAGAGGCGTTTCGATCACGGTTGAGCCGAGTACATTGCAGTTTACCAATGTGAATGAAGAGAAGACATTCAAGGTTGTGCTGCAAAGGACTGGAAAAGGCAAGAGTGTTGGGTATGTGTTTGGGACATTGGTGTTGTCAGATGGGAGGCATTTTGTTAGAAGTCCTATTGCAATGAATTTGGGAAAATGA 2322 45.99 MEAPNFSPFFFIFFLFSVLQITSTIAAKKSYIVYLGAPSYASNTPSEFDFQVVTETHYDILSTSVGSKELAKEAIFYSYTRNINGFAAVLDPKEAEDLKSHPNVISVLENKERELHTTRSWSFLGVENDNGIIRSNSIWNAAKFGEDIIIANIDTGVWPESKSFSDEGYGPIPSRWRGICQKSSNFNCNRKLIGARFFYKGYIAGGGSLNASQLTVRDDEGHGTHTLSTAGGNFVAGANVFSFGNGTAKGGAPKARVAAYKICWPALFFGGCFDADILAAFDAAIDDGVDVISASLGGSAQEFFDDTMALASFHAVQRGIPVVFSAGNSGPDVGSVTNVAPWQFTVGASSIDRDFTNHIVLGNKKLIQGESLSSTALPHNKYFPLINALDAKADRVPDNDALNCYDRTLDPNKVKGKIVVCRSNGGFSMSAGHEAARAGAVGMIATNDQQTGDRLIPELHLLPATVITYSSSISLFAYINSTKTPVAHISNVRTKLGVKPAPVMAWFSSRGPNTVEESILKPDITAPGVNILASFAAGATPTLIDDDKRRISFSVLSGTSMSCPHVSGVVGLLKTLYPKWSPAAIKSAIMTTAKTRSNDMRSIMDFNKLKASPLAYGAGHIHPNSAIDPGLVYDNTIEDYLNFLCARGYNETQLKRFSNKPFSCIKSFKVTDFNYPSISVPDLKMGVAVTINRRVKNVGGPGKYVARVKAPRGVSITVEPSTLQFTNVNEEKTFKVVLQRTGKGKSVGYVFGTLVLSDGRHFVRSPIAMNLGK 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43769229 43775042 + evm.model.ptg000003l.892 HCH6g0900 546394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0900 773 SUPERFAMILY PA domain 411 482 IPR046450 -
HCH6g0900 773 Pfam PA domain 400 471 IPR003137 -
HCH6g0900 773 ProSitePatterns Serine proteases, subtilase family, serine active site. 558 568 IPR023828 -
HCH6g0900 773 SUPERFAMILY Subtilisin-like 115 631 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH6g0900 773 FunFam Subtilisin-like protease SBT1.5 147 361 - -
HCH6g0900 773 Gene3D - 352 496 - -
HCH6g0900 773 Pfam Subtilase family 145 596 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
HCH6g0900 773 FunFam Subtilisin-like protease SBT1.5 644 771 - -
HCH6g0900 773 FunFam Subtilisin-like protease SBT5.3 19 116 - -
HCH6g0900 773 Pfam Fibronectin type-III domain 672 768 IPR041469 -
HCH6g0900 773 FunFam subtilisin-like protease SBT1.5 352 496 - -
HCH6g0900 773 CDD Peptidases_S8_3 114 593 IPR034197 -
HCH6g0900 773 ProSiteProfiles Serine proteases, subtilase domain profile. 120 627 - -
HCH6g0900 773 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 31 767 IPR045051 -
HCH6g0900 773 Pfam Peptidase inhibitor I9 30 116 IPR010259 -
HCH6g0900 773 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 17 116 IPR037045 -
HCH6g0900 773 Gene3D Peptidase S8/S53 domain 147 640 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH6g0900 773 CDD PA_subtilisin_like 359 489 - -
HCH6g0900 773 Gene3D - 644 771 - -
HCH6g0900 773 PRINTS Subtilisin serine protease family (S8) signature 145 164 IPR015500 -
HCH6g0900 773 PRINTS Subtilisin serine protease family (S8) signature 557 573 IPR015500 -
HCH6g0900 773 PRINTS Subtilisin serine protease family (S8) signature 218 231 IPR015500 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0900 HCH-Chr6:43769229 HCH6g0906 HCH-Chr6:43808913 4.00E-289 dispersed
HCH6g0900 HCH-Chr6:43769229 HCH6g0901 HCH-Chr6:43776676 5.00E-292 tandem
HCH2g1496 HCH-Chr2:56340328 HCH6g0900 HCH-Chr6:43769229 5.50E-134 transposed
HCH2g0636 HCH-Chr2:50157575 HCH6g0900 HCH-Chr6:43769229 5.70E-144 wgd
HCH3g1044 HCH-Chr3:14891858 HCH6g0900 HCH-Chr6:43769229 3.60E-229 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0900 - - - 0.0