Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0901 ATGGAGGCTTTGAATCTGTCTCCATTGATTCTGTTGTTCTTTCTTTTCTCTCTGTTGCAAGTATCAACATTTGCCACCAAAAAGTCTTACATTGTTTATTTGGGATCACATTCACATGGACTGAATCCTTCTTCAGTTGATCTCCAACGTGCAACGGAATCTCATTACAATTTACTGGGGTCAATCTTAGGAAGCAATGAGGCAGCAAAGGAAGCAATTTTCTATTCATATAACAGACATATCAATGGCTTTGCAGCTATGCTTGATGAAACAGTTGCAAGAGATCTAACAAAACATCCCAATGTGGCATCGGTACTCGAGAACAAGGGACGGAAGCTGCATACAACACATTCATGGAGTTTTCTTGGAATGGAGCAGAATGAAGTAATTCCTTCAAACTCCATATGGAATCTTGCAAGTTTTGGTGAATCAACAATCATCGCCAACCTCGATACAGGAGTTTGGCCAGAATCAAAGAGTTTCAGTGATGAAGGATATGGACCTATCCCATCAAAGTGGAGGGGAAGTTGTCAAGGTGGCTCCAAATTCTATTGCAACAGGAAGTTAATTGGAGCGAGGTATTTCAACAAAGCTTATGCAGCCTTTATGGGACCTCTCAATGCCAGCTTTGATTCCGCAAGGGACCATGATGGCCATGGAACACACACTTTATCCACTGCTGGTGGGAATTTTGTTCCTGGAGCTAGTGTTTTTGGCAATGGTAATGGAACTGCAAAAGGTGGTTCGCCTAGAGCTCGTGTTGCTGCCTATAAGGTATGTTGGCCTACACCGGACAAGACTGGAACGTGTATGGATGCAGACATCTTAGCTGCTATTGAAGCTGCTATTAGTGATGGAGTTGATGTTCTCTCGCTTTCATTGGGTGGAGATCCGGGAGAATTCATCGATGATCCGACAGCTATCGGGGCCTTTCATGCAGTTCAACACGGTATTATCGTCATTTGCTCTGCTGGAAACTCAGGACCAGATCTAGGAACGGTAGAAAATGTAGCACCCTGGATTTTAACTGTTGGAGCAAGTACAATTGATAGGATATTTGCTAATTATGTAGCCCTTGGAAACAAGCAGCATGTCAAGGGTACAAGCCTTTCTGCTAAACTATTGCCGGCACAGAAATTTTATCCATTGATTAACGCTGCAGATGCGAAAGGCAGCAATGTCCCCGAGCCTGAAGCCCAACTTTGTAAGGAAGGATCTCTTGATGTCAACAAGGTAAAAGGAAAGATTGTTGTTTGCCTTCGAGGGGAGAACGCAAGAGTCGACAAGGGTTATGCGGCCGCTCGAGCAGGGGCTGTTGGGATGATTTTGGCTAATGATGAGAAAGATGGGAATGAAATCATAGCTGATGCACACCTCCTTCCTGCTTCTCATATAACCTATACTGATGGCAGATTAGTATACCAATACATCAACTCTACTACGAATCCGATGGCTTACATGACTCACGTAAGGACCGAGGTTGGAATCAAACCAGCACCATTTATGGCTTCATTTTCATCAAGAGGTCCCAGTCCAATTGAGGAGTCAATCCTCAAGCCTGATATTACAGCACCGGGTGTGAGTATTATTGCAGCTTACTCCCAAGATGTATCACCAACTGGTTTGCCATTTGATAAGCGCCGGATCTCCTTTGGTGTAGAATCTGGCACTTCCATGTCTTGCCCCCACATTTCTGGTATCGTCGGCCTTCTTACGACCCTCTACCCAAAATGGAGTCCTGCAGCTATCAAATCTGCAATCATGACCACTGCCCAGACCAGAGGCAATGACTTAAGTCCAATACTAGACACAACACACATGAAAGCAAATCCATTTGCATATGGTGCAGGACATGTCTATCCAAATAGAGCAACAAACCCCGGCCTCGTTTACGACCTTACCGCCAAGGACTACTTGAACTTCTTATGTGCTAGAGGCTACAATGAAACACAGCTCAAGATATTCTCCTCTAAGCCACATGCTTGTTCGAAGTCGTTCAAATTAACAGATTTTAACTACCCATCTATCTCGGTACCAAACCTGAAATCAGATCTTGTGACAATCAACAGAAAAGTTAAGAATGTGGGAAAGCCGGGCACATACGTGGCTCATATCAAGGTGCCCTCCGGAGTTGCGGTCATCATTGAGCCGAGTACATTGAAGTTTACTGGAATTGGTGAAGAGAAGACTTTCAAAGTGTTATTGCAAAGTACTGGAAGAGGCAAGCATCAACAAGGCTATGTATTTGGTTCATTGGTTTGGTCAGATGGTGAGCATCATGTCAGAAGTCCTATTGCAGTGAATTTGGGATGA 2313 44.1 MEALNLSPLILLFFLFSLLQVSTFATKKSYIVYLGSHSHGLNPSSVDLQRATESHYNLLGSILGSNEAAKEAIFYSYNRHINGFAAMLDETVARDLTKHPNVASVLENKGRKLHTTHSWSFLGMEQNEVIPSNSIWNLASFGESTIIANLDTGVWPESKSFSDEGYGPIPSKWRGSCQGGSKFYCNRKLIGARYFNKAYAAFMGPLNASFDSARDHDGHGTHTLSTAGGNFVPGASVFGNGNGTAKGGSPRARVAAYKVCWPTPDKTGTCMDADILAAIEAAISDGVDVLSLSLGGDPGEFIDDPTAIGAFHAVQHGIIVICSAGNSGPDLGTVENVAPWILTVGASTIDRIFANYVALGNKQHVKGTSLSAKLLPAQKFYPLINAADAKGSNVPEPEAQLCKEGSLDVNKVKGKIVVCLRGENARVDKGYAAARAGAVGMILANDEKDGNEIIADAHLLPASHITYTDGRLVYQYINSTTNPMAYMTHVRTEVGIKPAPFMASFSSRGPSPIEESILKPDITAPGVSIIAAYSQDVSPTGLPFDKRRISFGVESGTSMSCPHISGIVGLLTTLYPKWSPAAIKSAIMTTAQTRGNDLSPILDTTHMKANPFAYGAGHVYPNRATNPGLVYDLTAKDYLNFLCARGYNETQLKIFSSKPHACSKSFKLTDFNYPSISVPNLKSDLVTINRKVKNVGKPGTYVAHIKVPSGVAVIIEPSTLKFTGIGEEKTFKVLLQSTGRGKHQQGYVFGSLVWSDGEHHVRSPIAVNLG 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43776676 43779921 + evm.model.ptg000003l.891 HCH6g0901 546395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0901 770 ProSitePatterns Serine proteases, subtilase family, serine active site. 556 566 IPR023828 -
HCH6g0901 770 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 114 IPR037045 -
HCH6g0901 770 FunFam Subtilisin-like protease SBT1.5 144 368 - -
HCH6g0901 770 ProSiteProfiles Serine proteases, subtilase domain profile. 118 625 - -
HCH6g0901 770 CDD Peptidases_S8_3 112 591 IPR034197 -
HCH6g0901 770 CDD PA_subtilisin_like 356 485 - -
HCH6g0901 770 Gene3D - 350 494 - -
HCH6g0901 770 Pfam Fibronectin type-III domain 670 767 IPR041469 -
HCH6g0901 770 SUPERFAMILY PA domain 411 482 IPR046450 -
HCH6g0901 770 Pfam Peptidase inhibitor I9 29 114 IPR010259 -
HCH6g0901 770 FunFam subtilisin-like protease SBT1.5 350 494 - -
HCH6g0901 770 Pfam PA domain 398 471 IPR003137 -
HCH6g0901 770 SUPERFAMILY Subtilisin-like 113 629 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH6g0901 770 Gene3D Peptidase S8/S53 domain 145 638 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH6g0901 770 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 30 765 IPR045051 -
HCH6g0901 770 FunFam Subtilisin-like protease SBT1.5 642 770 - -
HCH6g0901 770 Gene3D - 642 769 - -
HCH6g0901 770 FunFam Subtilisin-like protease SBT5.3 19 114 - -
HCH6g0901 770 SUPERFAMILY Protease propeptides/inhibitors 28 109 - -
HCH6g0901 770 PRINTS Subtilisin serine protease family (S8) signature 215 228 IPR015500 -
HCH6g0901 770 PRINTS Subtilisin serine protease family (S8) signature 555 571 IPR015500 -
HCH6g0901 770 PRINTS Subtilisin serine protease family (S8) signature 142 161 IPR015500 -
HCH6g0901 770 Pfam Subtilase family 142 603 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1058 HCH-Chr3:15529062 HCH6g0901 HCH-Chr6:43776676 3.30E-202 dispersed
HCH3g1060 HCH-Chr3:15651122 HCH6g0901 HCH-Chr6:43776676 1.50E-205 dispersed
HCH6g0608 HCH-Chr6:36670282 HCH6g0901 HCH-Chr6:43776676 5.10E-06 dispersed
HCH6g0901 HCH-Chr6:43776676 HCH7g0364 HCH-Chr7:2629960 3.60E-274 dispersed
HCH6g0901 HCH-Chr6:43776676 HCH6g0906 HCH-Chr6:43808913 0.00E+00 proximal
HCH6g0900 HCH-Chr6:43769229 HCH6g0901 HCH-Chr6:43776676 5.00E-292 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0901 - - - 0.0