Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0906 ATGGAGGCCTCCAATCTTTCCACAATATCGCTTTTCATGTTCTTTCTTTTGTCTTTTTTTCTAACACCCACCATTGCCACCAAAAAGTCTTACGTTATTTATTTGGGATCACATTCTCATGGATTGAATCCTACTTCATTGGATGTCCAACTTGCAACCGAGTCTCATTATGATTTACTTGGATCTATATTGGGAAGCAAAGAGAGAGCCAAGGAATCAATTTTCTATTCGTATAACAGATTCATCAATGGCTTCGCTGCCTTACTCGATGAGAAGCAGGCCGCAGATCTTTCCAATTATCCAAACGTGGTATCGGTTTTCGAAAGCAAGGAAAGAAAATTACACACAACTCGTTCGTGGAATTTTCTAGGGCTAGCAAATGAAAATGATGAAGGAATTCCTTCCTATTCAATTTGGAATGCTTCGAGGTTTGGTGAAGACACGATCATTGCCAACTTCGACACAGGTGTTTGGCCGGAATCGAAAAGCTTTAGTGACGGAGGCTATGGGCCTGTTCCATCGAAGTGGCGAGGAATTTGTCAGGCTGACGCCGACGCTAATTTCCGTTGCAATAGAAAGCTGATAGGAGCGAGGTTTTTCAACAAAGCCTATGGCATACTCAATGCCACCTTTAACTCTTCAAGGGACCACGACGGCCATGGAACACACACTTTATCCACTGCTGGTGGCAATTTCGTTTCTGGAGCTAATGTTTTTGGCTATGGTAATGGAACTGCAAAAGGTGGTTCACCGAGAGCCCGTGTTGCTTCCTACAAGGTTTGCTGGCCGGCCGAAGGCGGTGGCTGTTTCGATCCAGATATTCTGGCCGCCTTTGAAGCTGCTATTGGTGATGGTGTAGATGTTCTCTCGATTTCTGTGGGTGGAGATGCCACAGAGTTTCTCATTGATGGACTTTCTATTGGAGCTTTTCACGCAGTTCAACACGGTATCGTTGTTGTTAGCTCTGCCGGGAACACAGGACCAGCTCTTGAGACTGTAACAAATGTATCGCCATGGATATTAACCGTCGGAGCTAATACGATTGATAGGGACTTCACCAACTTTGTGGTTCTTGGAAATAAGAAACGACTCAAGGGTACAAGCCTTTCTTCCAAAGCATTACCAGCCAACAAGTTGTACCCACTGATCAATGCTGTGGATGCGAAAGCCAATAACGTCTCTAATGCCGATGCTGAAATATGTGACGACGGATCTCTTGATCCTTCAAAGGTGAATGGAAAGATTGTGGTTTGCCTCCGAGGGGTCAATTCAAGAGTGGACAAGGGCTTTGTGGCTGCACTGGCTGGGGCTGTGGGGATGATTTTGGTTAACGATGAGCGAAGTGGGAATGACGTTTTTGCCGATCCCCACATCATTCCAGCTTCTCATGTCAACTACAATGATGGCAGTTTTATCTCCCAGTACATCAGTTCGACCAAGATGCCTGTGGCTCTCATCACTCCTATAAGGACTGAACTGGGAATCAAATCAGCACCGGTTATGGCTGCATTCTCGGCAAGAGGTCCCAATACAATTGAGGAGTCAATCCTCAAGCCTGATATAACAGCGCCAGGTGTGAATATAGTTGCGGCTTACCCCGAAGGAATATCTCCGTCCAACATACCATCTGATAATCGTCGAATCCCTTTCAATACCGAATCTGGCACTTCCATGTCATGCCCCCACGTTGCCGGTCTTGTAGGCCTTCTCAAGACCCTCCATCCACATTGGAGTCCAGCAGCTATCAGATCTGCAATAATGACCACAGCCAAAACCAAAGGCGATGACTCACGTCCAATTCTAGACTCAACCAAGCTCAAAGCAACTCCATTCGCTTATGGTGCCGGGCATGTTCATCCAAACAATGCAATGGACCCTGGCCTCGTTTACGATATTGGCACTGACGACTACTTGAATTTCCTATGCGCTCGAGGCTATAACGAAACACAAATCAAACTATTCTCCGATAAGCCGTTCATTTGTGCGAAATCATTCAAAGTAACAGATCTCAACTACCCATCAATCTCAGTTCCTAATCTGAAATTGGGTCCTGTGACAATCAATCGAAAAGTTAAGAATGTGGGAAGCCCAGGCACATATGTGGCACAAGTCAAAGAACCTCAAGGAGTTTCGGTTTCAGTTGAGCCAAGTACATTGCAATTCACTGGTGTGGATGAAGAGAAGGCTTTTAAAATTGTGTTGCAGAGTGCAGGAAAAAACATGAACCAAAATTATGTATTTGGGAGATTGACTTGGTCAGATGGTAAGCATTATGTAAGAAGTCCCATTGTTGTGAAATTGGGCTAA 2307 45.08 MEASNLSTISLFMFFLLSFFLTPTIATKKSYVIYLGSHSHGLNPTSLDVQLATESHYDLLGSILGSKERAKESIFYSYNRFINGFAALLDEKQAADLSNYPNVVSVFESKERKLHTTRSWNFLGLANENDEGIPSYSIWNASRFGEDTIIANFDTGVWPESKSFSDGGYGPVPSKWRGICQADADANFRCNRKLIGARFFNKAYGILNATFNSSRDHDGHGTHTLSTAGGNFVSGANVFGYGNGTAKGGSPRARVASYKVCWPAEGGGCFDPDILAAFEAAIGDGVDVLSISVGGDATEFLIDGLSIGAFHAVQHGIVVVSSAGNTGPALETVTNVSPWILTVGANTIDRDFTNFVVLGNKKRLKGTSLSSKALPANKLYPLINAVDAKANNVSNADAEICDDGSLDPSKVNGKIVVCLRGVNSRVDKGFVAALAGAVGMILVNDERSGNDVFADPHIIPASHVNYNDGSFISQYISSTKMPVALITPIRTELGIKSAPVMAAFSARGPNTIEESILKPDITAPGVNIVAAYPEGISPSNIPSDNRRIPFNTESGTSMSCPHVAGLVGLLKTLHPHWSPAAIRSAIMTTAKTKGDDSRPILDSTKLKATPFAYGAGHVHPNNAMDPGLVYDIGTDDYLNFLCARGYNETQIKLFSDKPFICAKSFKVTDLNYPSISVPNLKLGPVTINRKVKNVGSPGTYVAQVKEPQGVSVSVEPSTLQFTGVDEEKAFKIVLQSAGKNMNQNYVFGRLTWSDGKHYVRSPIVVKLG 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43808913 43813415 + evm.model.ptg000003l.886 HCH6g0906 546400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0906 768 FunFam Subtilisin-like protease SBT5.3 20 115 - -
HCH6g0906 768 Gene3D - 641 767 - -
HCH6g0906 768 CDD Peptidases_S8_3 113 590 IPR034197 -
HCH6g0906 768 FunFam Subtilisin-like protease SBT1.5 147 361 - -
HCH6g0906 768 Pfam Fibronectin type-III domain 669 765 IPR041469 -
HCH6g0906 768 ProSiteProfiles Serine proteases, subtilase domain profile. 119 624 - -
HCH6g0906 768 SUPERFAMILY Subtilisin-like 114 628 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH6g0906 768 ProSitePatterns Serine proteases, subtilase family, serine active site. 555 565 IPR023828 -
HCH6g0906 768 FunFam subtilisin-like protease SBT1.5 349 493 - -
HCH6g0906 768 Pfam Subtilase family 146 602 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
HCH6g0906 768 SUPERFAMILY PA domain 408 485 IPR046450 -
HCH6g0906 768 CDD PA_subtilisin_like 356 486 - -
HCH6g0906 768 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 115 IPR037045 -
HCH6g0906 768 Gene3D - 349 493 - -
HCH6g0906 768 Pfam PA domain 397 469 IPR003137 -
HCH6g0906 768 Pfam Peptidase inhibitor I9 30 115 IPR010259 -
HCH6g0906 768 FunFam Subtilisin-like protease SBT1.5 641 768 - -
HCH6g0906 768 Gene3D Peptidase S8/S53 domain 147 637 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH6g0906 768 PRINTS Subtilisin serine protease family (S8) signature 554 570 IPR015500 -
HCH6g0906 768 PRINTS Subtilisin serine protease family (S8) signature 216 229 IPR015500 -
HCH6g0906 768 PRINTS Subtilisin serine protease family (S8) signature 145 164 IPR015500 -
HCH6g0906 768 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 56 764 IPR045051 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0176 HCH-Chr4:1019481 HCH6g0906 HCH-Chr6:43808913 3.10E-148 dispersed
HCH6g0900 HCH-Chr6:43769229 HCH6g0906 HCH-Chr6:43808913 4.00E-289 dispersed
HCH6g0906 HCH-Chr6:43808913 HCH7g0364 HCH-Chr7:2629960 3.30E-267 dispersed
HCH6g0901 HCH-Chr6:43776676 HCH6g0906 HCH-Chr6:43808913 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0906 - - - 0.0