Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0909 ATGCAATCTATTAATGCTGTTGGTCATGGATCAGTTTCTGAAAGTTTACTTGCCAGTGATAGTAAAATGTTGATGAAAGTTGCTTATAGGAGTGTCAAGATTGTCATTTTCTCAAGTAAACTCAATTTCCTTATGCCTTTTGGGCCTCTAGCAATTCTTGTTGATAAGTTTTCTGGTCATAATAGTTGGGTCTTCTTTCTCAGTATGTTGGGAACTATACCTTTGGCTGAGCGGTTAGGTTATGCTACAGAGCAGCTGGCTTTTTACACTGGACCTACAGTTGGGGGTTTATTCAATGCTACTTTTGGAAATGCAACAGAACTTATCATATCAATCTATGCACTGAAAAATCGAATGATACGTGTTGTTCAGCTGTCGTTACTAGGTTCAATTCTATCAAACATGTTGCTGGTTCTTGGTTGTGCATTCTTCTGTGGTGGGATTGTTTTCCATAAAAAGGAACAGAGTTTCAACAAGGCAACTGCCGTTGTCAACTTAGGATTGTTGTTAATGGCTGTCATGGGCCTGCTCTTTCCTGCTGTTCTGCACTACACACATAGTGAAGCGTATTTTGGAAAGTCGGAATTGGCACTCTCTAGATTCAGCAGTTGCATTATGCTTCTAGCTTATGCAGTTTATCTTTTCTTCCAATTAAAAAGTCAGAAAATTCTTTATGCTCCTATTTATGAGGAAGAAACTCAGAGTGGACAGAGCTCAGATGAAGATGAAGCTCCTGAGATCTCAAAGTGGGAATCCATTATATGGCTTTCAGTTTTGACTACTTGGATCTCTGTCCTATCAGCATACTTGGTTGATGCAATGGAGGGAGCATCTGTAGCATTGAAAATTCCGGTAGCGTTTATTAGTGTTATACTACTCCCAGTTATAGGGAATGCTGCTGAGCATGCAAGTGCTGTTATGTTTGCTATGAAAGACAAGCTTGATATTTCTCTGGGTGTTGCAATTGGATCGTCAACTCAGATTTCTATGTTTGGAATTCCTTTCTGTGTGGTAATTGGGTGGATTATGGGGCAAGCGATGGACTTGAACTTTAAACTCTTTGAGACAGCAACGCTTTTTATAACTGTCATTGTAGTAGCTTTCTTGCTGCAGGAAGGAACTTCAAATTACTTTAAAGGGCTTATGCTTATTCTTTGCTATCTGATCGTCGCGGCTAGTTTTTTTGTGCACGTCGATCCTCCTTCACCAGAGAACAAACTGGCGAACTTAAACGCATAG 1239 39.87 MQSINAVGHGSVSESLLASDSKMLMKVAYRSVKIVIFSSKLNFLMPFGPLAILVDKFSGHNSWVFFLSMLGTIPLAERLGYATEQLAFYTGPTVGGLFNATFGNATELIISIYALKNRMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFHKKEQSFNKATAVVNLGLLLMAVMGLLFPAVLHYTHSEAYFGKSELALSRFSSCIMLLAYAVYLFFQLKSQKILYAPIYEEETQSGQSSDEDEAPEISKWESIIWLSVLTTWISVLSAYLVDAMEGASVALKIPVAFISVILLPVIGNAAEHASAVMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGQAMDLNFKLFETATLFITVIVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPPSPENKLANLNA 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43853292 43856087 + evm.model.ptg000003l.883 HCH6g0909 546403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0909 412 Gene3D - 92 239 IPR044880 -
HCH6g0909 412 Gene3D - 240 396 IPR044880 -
HCH6g0909 412 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 20 400 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
HCH6g0909 412 FunFam Vacuolar cation/proton exchanger 240 396 - -
HCH6g0909 412 Pfam Sodium/calcium exchanger protein 252 394 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH6g0909 412 Pfam Sodium/calcium exchanger protein 63 218 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
HCH6g0909 412 FunFam Vacuolar cation/proton exchanger 92 231 - -
HCH6g0909 412 NCBIfam calcium/proton exchanger 45 395 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g0639 HCH-Chr2:50201946 HCH6g0909 HCH-Chr6:43853292 9.90E-163 dispersed
HCH6g0027 HCH-Chr6:437090 HCH6g0909 HCH-Chr6:43853292 1.20E-152 dispersed
HCH6g0909 HCH-Chr6:43853292 HCH9g0774 HCH-Chr9:5290648 1.80E-91 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0909 K07300 - mdm:114819444 621.313