Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0920 ATGTCTAACTATCAAAACCAACATCTTTCCAACAAGAACCCAGAAATTATTTCAAGCTCTTTACCTCTTTCAACTCCTCAACAGCCCCATGAATCTCTTTCTGAAGCTGAAAATGGCGATTTTTCACTCTCTGCCCCTCTCACTAAAGCTTATCCTTCAGCTACTGCTAAGTATGAGGAAGTTGTTAACGATTCAGAGCTTTTCTGGGAAAAGCTCAAATCTTTTAACAGCTCTTTGGGAGCTAAATTTATAATTCCTACAATCGGAGGCAAGACTCTGGATCTGCACTGCCTTTTTGTGGAAGTCACTTCTCGTGGCGGTATTGAAAAGGTAATAAGAGATCGCAGATGGAAGGAAGTAGTTGTGGTATTCAAATTCCCTACATCAATCACCAGCGGATCGTTTGTCTTGCGAAAGTATTATATATCATTGCTTTATCACTTTGAGCAGGTCTATTACTTCAACAAACAAGAGTATTCTATTTCAGCTTCTGACCCGATGAGCAAGAGCCTTCTCAGTGGATCCACAACCCGAGAGGAAGATGCTTGTACAGCTACGGACCATTCACAAAGTCAAGAATGCCCAACACTGCAGCTTGGCAGTTTGGTAAGTGGATCTATTGACGGAAAATTCGATGATGGGTATCTCATCACCGTCACCTTAGGCTCCACTCAGCTGAAGGGTGTCATGTATCACATTCCAGTACAAGTGCCTCCGAATAGCCTGGTTATGCATACTCGTAGACATAGGAAGAGATCAAGGATGGCATCGCGGGATCCCTCTCAGCCCAAATCTAACAGGAGTGGCTACAACTTTTTCTTTGCGGAAAATTATGCCAGGCTTAAACCCCTATACCATGGACAGGAGAGATCTATCAGCAAGAAAATTGGGGTCCTTTGGAACAATCTCACAGATGCTGAAAAACAGGTGTATCAGGAAAAAGGGTTGAAGGACAAGGAGCGATACAGAACCGAAATGATGGAATACAAATCTTCCAACGCATCAACACCTCAATAG 1017 42.97 MSNYQNQHLSNKNPEIISSSLPLSTPQQPHESLSEAENGDFSLSAPLTKAYPSATAKYEEVVNDSELFWEKLKSFNSSLGAKFIIPTIGGKTLDLHCLFVEVTSRGGIEKVIRDRRWKEVVVVFKFPTSITSGSFVLRKYYISLLYHFEQVYYFNKQEYSISASDPMSKSLLSGSTTREEDACTATDHSQSQECPTLQLGSLVSGSIDGKFDDGYLITVTLGSTQLKGVMYHIPVQVPPNSLVMHTRRHRKRSRMASRDPSQPKSNRSGYNFFFAENYARLKPLYHGQERSISKKIGVLWNNLTDAEKQVYQEKGLKDKERYRTEMMEYKSSNASTPQ 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43953854 43957817 + evm.model.ptg000003l.872 HCH6g0920 546414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0920 338 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 44 335 - -
HCH6g0920 338 SMART ARID_2 59 149 - -
HCH6g0920 338 MobiDBLite consensus disorder prediction 246 268 - -
HCH6g0920 338 Gene3D - 51 169 IPR036431 GO:0003677(InterPro)
HCH6g0920 338 MobiDBLite consensus disorder prediction 166 189 - -
HCH6g0920 338 SMART hmgende2 262 331 IPR009071 -
HCH6g0920 338 SUPERFAMILY HMG-box 260 332 IPR036910 -
HCH6g0920 338 PRINTS High mobility group (HMG1/HMG2) protein signature 314 334 - -
HCH6g0920 338 PRINTS High mobility group (HMG1/HMG2) protein signature 295 314 - -
HCH6g0920 338 Pfam ARID/BRIGHT DNA binding domain 65 149 IPR001606 GO:0003677(InterPro)
HCH6g0920 338 CDD ARID_HMGB9-like 64 149 IPR045303 GO:0003677(InterPro)
HCH6g0920 338 ProSiteProfiles ARID domain profile. 62 153 IPR001606 GO:0003677(InterPro)
HCH6g0920 338 SMART bright_3 63 154 IPR001606 GO:0003677(InterPro)
HCH6g0920 338 MobiDBLite consensus disorder prediction 1 37 - -
HCH6g0920 338 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 263 330 IPR009071 -
HCH6g0920 338 Pfam HMG (high mobility group) box 263 330 IPR009071 -
HCH6g0920 338 SUPERFAMILY ARID-like 60 160 IPR036431 GO:0003677(InterPro)
HCH6g0920 338 MobiDBLite consensus disorder prediction 166 180 - -
HCH6g0920 338 CDD HMG-box_AtHMGB9-like 263 329 - -
HCH6g0920 338 Gene3D High mobility group box domain 247 338 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0920 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0920 HCH-Chr6:43953854 HCH6g1418 HCH-Chr6:47984744 3.60E-77 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH6g1418 . 28 367 ARID Transcription Factor Family AT1G04880 59.3 1.4e-105 380.2
HCH12g0028 . 74 352 ARID Transcription Factor Family AT1G20910 64.9 2.4e-101 365.9
HCH13g1287 . 212 477 ARID Transcription Factor Family AT1G20910 61.4 3.3e-90 328.9
HCH12g0090 . 18 313 ARID Transcription Factor Family AT1G76110 65.8 1.1e-110 396.7
HCH12g0028 . 58 382 ARID Transcription Factor Family AT1G76510 67.8 2.3e-124 442.6
HCH13g1287 . 187 507 ARID Transcription Factor Family AT1G76510 61.3 2.4e-110 396.0
HCH6g0920 . 53 335 ARID Transcription Factor Family AT3G13350 55.3 3.2e-83 305.4
HCH6g0039 . 2 773 ARID Transcription Factor Family AT3G43240 59.5 6.0e-266 913.7
HCH4g1549 . 2 766 ARID Transcription Factor Family AT3G43240 59.7 4.3e-264 907.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016229 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 0 0 1 8
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33727 PF01388 ARID 5.40E-15 CL0123 HCH TR