Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0920 ATGTCTAACTATCAAAACCAACATCTTTCCAACAAGAACCCAGAAATTATTTCAAGCTCTTTACCTCTTTCAACTCCTCAACAGCCCCATGAATCTCTTTCTGAAGCTGAAAATGGCGATTTTTCACTCTCTGCCCCTCTCACTAAAGCTTATCCTTCAGCTACTGCTAAGTATGAGGAAGTTGTTAACGATTCAGAGCTTTTCTGGGAAAAGCTCAAATCTTTTAACAGCTCTTTGGGAGCTAAATTTATAATTCCTACAATCGGAGGCAAGACTCTGGATCTGCACTGCCTTTTTGTGGAAGTCACTTCTCGTGGCGGTATTGAAAAGGTAATAAGAGATCGCAGATGGAAGGAAGTAGTTGTGGTATTCAAATTCCCTACATCAATCACCAGCGGATCGTTTGTCTTGCGAAAGTATTATATATCATTGCTTTATCACTTTGAGCAGGTCTATTACTTCAACAAACAAGAGTATTCTATTTCAGCTTCTGACCCGATGAGCAAGAGCCTTCTCAGTGGATCCACAACCCGAGAGGAAGATGCTTGTACAGCTACGGACCATTCACAAAGTCAAGAATGCCCAACACTGCAGCTTGGCAGTTTGGTAAGTGGATCTATTGACGGAAAATTCGATGATGGGTATCTCATCACCGTCACCTTAGGCTCCACTCAGCTGAAGGGTGTCATGTATCACATTCCAGTACAAGTGCCTCCGAATAGCCTGGTTATGCATACTCGTAGACATAGGAAGAGATCAAGGATGGCATCGCGGGATCCCTCTCAGCCCAAATCTAACAGGAGTGGCTACAACTTTTTCTTTGCGGAAAATTATGCCAGGCTTAAACCCCTATACCATGGACAGGAGAGATCTATCAGCAAGAAAATTGGGGTCCTTTGGAACAATCTCACAGATGCTGAAAAACAGGTGTATCAGGAAAAAGGGTTGAAGGACAAGGAGCGATACAGAACCGAAATGATGGAATACAAATCTTCCAACGCATCAACACCTCAATAG 1017 42.97 MSNYQNQHLSNKNPEIISSSLPLSTPQQPHESLSEAENGDFSLSAPLTKAYPSATAKYEEVVNDSELFWEKLKSFNSSLGAKFIIPTIGGKTLDLHCLFVEVTSRGGIEKVIRDRRWKEVVVVFKFPTSITSGSFVLRKYYISLLYHFEQVYYFNKQEYSISASDPMSKSLLSGSTTREEDACTATDHSQSQECPTLQLGSLVSGSIDGKFDDGYLITVTLGSTQLKGVMYHIPVQVPPNSLVMHTRRHRKRSRMASRDPSQPKSNRSGYNFFFAENYARLKPLYHGQERSISKKIGVLWNNLTDAEKQVYQEKGLKDKERYRTEMMEYKSSNASTPQ 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 43953854 43957817 + evm.model.ptg000003l.872 HCH6g0920 546414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0920 338 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 44 335 - -
HCH6g0920 338 SMART ARID_2 59 149 - -
HCH6g0920 338 MobiDBLite consensus disorder prediction 246 268 - -
HCH6g0920 338 Gene3D - 51 169 IPR036431 GO:0003677(InterPro)
HCH6g0920 338 MobiDBLite consensus disorder prediction 166 189 - -
HCH6g0920 338 SMART hmgende2 262 331 IPR009071 -
HCH6g0920 338 SUPERFAMILY HMG-box 260 332 IPR036910 -
HCH6g0920 338 PRINTS High mobility group (HMG1/HMG2) protein signature 314 334 - -
HCH6g0920 338 PRINTS High mobility group (HMG1/HMG2) protein signature 295 314 - -
HCH6g0920 338 Pfam ARID/BRIGHT DNA binding domain 65 149 IPR001606 GO:0003677(InterPro)
HCH6g0920 338 CDD ARID_HMGB9-like 64 149 IPR045303 GO:0003677(InterPro)
HCH6g0920 338 ProSiteProfiles ARID domain profile. 62 153 IPR001606 GO:0003677(InterPro)
HCH6g0920 338 SMART bright_3 63 154 IPR001606 GO:0003677(InterPro)
HCH6g0920 338 MobiDBLite consensus disorder prediction 1 37 - -
HCH6g0920 338 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 263 330 IPR009071 -
HCH6g0920 338 Pfam HMG (high mobility group) box 263 330 IPR009071 -
HCH6g0920 338 SUPERFAMILY ARID-like 60 160 IPR036431 GO:0003677(InterPro)
HCH6g0920 338 MobiDBLite consensus disorder prediction 166 180 - -
HCH6g0920 338 CDD HMG-box_AtHMGB9-like 263 329 - -
HCH6g0920 338 Gene3D High mobility group box domain 247 338 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0920 HCH-Chr6:43953854 HCH6g1418 HCH-Chr6:47984744 3.60E-77 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33727 PF01388 ARID 5.40E-15 CL0123 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0920 - - - 0.0