Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0924 ATGGGAAGGACTGATGATAATGTTGCAATTATTGGAGATTGGGTGCCTCCAAGTCCCAGTCCAAGAACCTTTTTCTCAGCCATGCTAGGGGAAGACGTTGGCTCTAGGCCAGTCATGGATACTACTGGCAGTGACAAAACTGAAGAGCTGTTTTTCAGACCTCGAGAACATATGATATCAGGAAATGTTAATACAAAAGGAGGGACCCCTGGTATTAATTATGGCCAGTCAACAGATTCAGGGTCACTTTCTGAGCAGAAATTCCGTGGGGGTCTCGTGGAGAGGATAGCTGCCAGAGCTGGATTCAATGCTCCAAGATTGAATACTGATAGCATCAGATCCACAGACCACTCTGTCAGCTCTGAAATCAAGTCTCCTTACTTAACAATTCCACCTGGTCTCAGTCCAACTACATTGCTAGATTCACCGGTCTTTCTTTCAAATTCATTGGCTCAGCAATCTCCTACAACTGGAAAGTTCTCATTTTTGGCAAATGGTGGTAATAGGAGCAGTATGATGATTTCCGAGGCCAATAATAAGGGTCGCGGCAATCTATTTGATGATAACAATACATCATTTGCTTTCAGGCCTGGACTTGAATCAGGATCATCTTTTTTTCTTGAAGCAGCAAGCAAAATAGCTACTTCCACTATTCTTCCGCAATATTTTCCCAGCATTGAGGTTTCAGTACAACGTTCAGAAAATTCTTTTCAATCTCATCTTCTAGAACCATCTCTATCTTTACCCCCAGATAGAATTAATCATCATCCTCAAGTTGGTATCTCCAAATCGTGTACAGAGAGAGAAGATGGTGGTAAGACCGTTTCAGACGATCAAAGACCCTCTGATTCTATGGTTGGCGGTGGTGAACATTCTTCACCACTTGATGAGCAACCAGATGAAGGAGAACAAAGAGGCAGTGGGGATTCGATTGTTGGTGGTGGCTGTGGTGCTCCGTCGGAGGATGGATATAATTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGTGAGTATCCACGGAGTTACTACAAGTGCACTCATCCCAACTGTCAGGTCAAGAAGAAAGTAGAACGATCTCATGAGGGCCATATAACAGAGATCATCTATAAAGGGGCACATAACCATCCAAAGCCTTCTCCAAATCGCCGATCAGCAATTGGTTCTTCTGACTCTCACATCAACATGCAACTAGACATCCCTGCACAAGCAGGTCCACAGGGTGCTGAAGGTCCACTTTGGGAAGATTCACAAAAGGGGATTCCGGCTGGTGCTCCTGATTGGATGCATGAAAACCTTGAGGTGACATCATCAGCATCCTTGGGTCCTGAATATGGAAATCAGCCTAACCCTTTACAGGCTCAAAATGGAAGTCACGTGGAATCAGTTGATGCCGTTGATGCCTCATCCACATTTTCTAATGATGAAGATGAAGATGATAGAGGGACTCATGGCAGTATAACATTAGGATATGAGGGGGAAGGAGATGAATCTGAGTCTAAAAAAAGGAAACTTGATGCATACGTAACAGAAATGAGCGGGGCTACTAGAGCCATCCGTGAACCTAGAGTCGTAGTCCAGACCACCAGTGAAGTTGATATCTTGGATGATGGTTATCGTTGGCGCAAATATGGACAGAAGGTTGTGAAAGGAAATCCAAATCCTAGGAGTTACTACAAGTGCACCAATCCAGGCTGCACGGTGAGGAAGCATGTTGAAAGGGCATCACATGACCTGAAGTCGGTGATCACCACATATGAAGGAAAACATAATCATGACGTTCCTGCCGCTCGCAATAGCAGCCACATCAGCTCTGGCACATCCAGTCCCATAGCTGCCCAAAATTCGACAGGTGCTGTTCAAACTCATGTTCACAGGCCAGGGCCATCCCAGGCTCAAAACACCATGTCAAGATTTGAAAGGCCATCCTTTGGCCTTCCTGGAAGACAGCAGCTGGGTGCTTCCCATGGCTTCTCTTTTGGAATGAATCAACCTGGACTGGGGAACCTAACAATGACTGGAGTCGGCCAAGCCAAACTTCCCGTTCTTCCGATGCATCCATACTTACGGCAGCAGCACCACGTTAACGAAATGGGTTACTTGATGCCTAAAGGAGAACCAAACGTCGAACCTACTTCTGATCTTGGCTTGAACTTTTCGAACGGTTCAACTGTGTATCAGCAAATAATGAGTAGGCTTCCTCTTGGACCTGAGATGTGA 2220 45.27 MGRTDDNVAIIGDWVPPSPSPRTFFSAMLGEDVGSRPVMDTTGSDKTEELFFRPREHMISGNVNTKGGTPGINYGQSTDSGSLSEQKFRGGLVERIAARAGFNAPRLNTDSIRSTDHSVSSEIKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFSFLANGGNRSSMMISEANNKGRGNLFDDNNTSFAFRPGLESGSSFFLEAASKIATSTILPQYFPSIEVSVQRSENSFQSHLLEPSLSLPPDRINHHPQVGISKSCTEREDGGKTVSDDQRPSDSMVGGGEHSSPLDEQPDEGEQRGSGDSIVGGGCGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPSPNRRSAIGSSDSHINMQLDIPAQAGPQGAEGPLWEDSQKGIPAGAPDWMHENLEVTSSASLGPEYGNQPNPLQAQNGSHVESVDAVDASSTFSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSGTSSPIAAQNSTGAVQTHVHRPGPSQAQNTMSRFERPSFGLPGRQQLGASHGFSFGMNQPGLGNLTMTGVGQAKLPVLPMHPYLRQQHHVNEMGYLMPKGEPNVEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM 739
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44014255 44018159 - evm.model.ptg000003l.868 HCH6g0924 546418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0924 739 MobiDBLite consensus disorder prediction 439 503 - -
HCH6g0924 739 SUPERFAMILY WRKY DNA-binding domain 319 379 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0924 739 Pfam WRKY DNA -binding domain 536 593 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0924 739 Pfam WRKY DNA -binding domain 321 377 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0924 739 FunFam WRKY transcription factor 33 522 588 - -
HCH6g0924 739 MobiDBLite consensus disorder prediction 402 426 - -
HCH6g0924 739 MobiDBLite consensus disorder prediction 262 277 - -
HCH6g0924 739 MobiDBLite consensus disorder prediction 597 613 - -
HCH6g0924 739 MobiDBLite consensus disorder prediction 591 613 - -
HCH6g0924 739 Gene3D WRKY domain 317 380 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0924 739 ProSiteProfiles WRKY domain profile. 321 379 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0924 739 SUPERFAMILY WRKY DNA-binding domain 527 595 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0924 739 Gene3D WRKY domain 522 588 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0924 739 MobiDBLite consensus disorder prediction 439 470 - -
HCH6g0924 739 ProSiteProfiles WRKY domain profile. 530 595 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0924 739 FunFam WRKY transcription factor 313 380 - -
HCH6g0924 739 SMART WRKY_cls 535 594 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0924 739 SMART WRKY_cls 320 378 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0924 739 MobiDBLite consensus disorder prediction 243 327 - -
HCH6g0924 739 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 242 617 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0240 HCH-Chr11:2178035 HCH6g0924 HCH-Chr6:44014255 4.10E-57 dispersed
HCH13g0701 HCH-Chr13:5721942 HCH6g0924 HCH-Chr6:44014255 5.20E-67 dispersed
HCH3g1486 HCH-Chr3:52888217 HCH6g0924 HCH-Chr6:44014255 1.20E-72 dispersed
HCH5g0574 HCH-Chr5:3954412 HCH6g0924 HCH-Chr6:44014255 4.30E-14 dispersed
HCH6g0856 HCH-Chr6:43373510 HCH6g0924 HCH-Chr6:44014255 1.30E-85 dispersed
HCH6g0924 HCH-Chr6:44014255 HCH7g0326 HCH-Chr7:2339749 6.30E-58 dispersed
HCH6g0924 HCH-Chr6:44014255 HCH1g0893 HCH-Chr1:57396564 9.40E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33728 PF03106 WRKY 3.00E-24 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0924 K18835 - csv:101207853 1199.5