Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0928 ATGGTCATGGACCCTTTCAATTCCTCTCATCATCATCAGCAAGAAGAGGAAGATGGTATCTCAGATCTGCAGTATCAGTTACCATCTCAATGCCCTCCCAATGCAATCCATATGCGCCAATTACTCATCCGTTGCGCCCATTTCATCTCTCACACCGACTTCCTCGCCGCCCGCCGCCTTATCTCCTTCCTCTCCGCCAGCTCCTCCCCTTACGGCGACTCAACCGAGAGATTGGTTCATCAATTCTCTAGTGCTCTCTTCCGCCGCCTTACTTATTGCGAGGCTGCCGCTACTACTACTACTACTACTCCCTTGACTGTGACTACTTCCACTGCCGAGGTGGGATCGACATCGAAGCTTTTGATCACGGCAGAGAGGGAGAAAGCTTGCGGTTATATCGACGAAAACGTCGAAAGAGTTGAGCTAGAAGAAGAGGCCGTTCAGTCTTGTTATCTTTCGCTGAATCAGATAACTCCGTTTGTACGCTTCAGTCACTTGACTGCCAATCAAGCTATCTTGGAAGCTATTGATGAAGGTCAGCAAGCTATCCATGTTATCGATTTCGATATAATGCACGGCGTTCAATGGCCTCCGCTTATGCAGGCGTTGGCGGAGAGGACGGCTTACAATGATGCAGCATTCTACCGCCCTCCGCCCCTGCTCCGCATCACCGCAACCGGCCGTGATCTTAACTTCCTTCACAAAACAGGAGACCGGCTTTCCAAGTTTGCGCAATCACTCGGTCTTAGGTTTCAGTTTCATCCTCTCCTCCTCCTCAACGACCACGATCACCACCGCCTCATTCCGTCGGCGCTCACTCTTCTCCCCGACGAAGCCCTAGCCGTCAACTGCGTCCTTTATCTACACAAGCTTCTTAAGGATGATCTCCAATTATTGCTTCATAAAATCAAAGCCCTAAACCCTAAGGTCGTCACCATTGCAGAGAAAGAGGCTAATCACAACCATCCATTGTTCATGCAAAGATTTATGGAAGCTCTCAACCATTATTCCCTCATCTTTGATTCATTGGAAGCGACGTTGCCCCCCAACAGCCGGGAGAGGCTGGCGGTGGAGCAAATATGGTTCGGAAGGGAAATCAGCGACGTGGTGGCGGCGGAGGGAAACGGAAGAAGACAGCGGCATGAAAGGTATGAATCATGGGAGGTTATGCTTAGAAGTTTGGGATTTTCCAACATTCCGTTGAGCCCATTTGCCCTATCTCAGGCCAAACTTCTCCTTAGACTCCATTACCCTTCTGAAGGTTATCAGCTTCAAATTCTTCATGATTCTCTTTTTCTAGGTTGGCAAAATCGCTCCCTTTTCTCTGTCTCTTCATGGCATTGA 1344 49.33 MVMDPFNSSHHHQQEEEDGISDLQYQLPSQCPPNAIHMRQLLIRCAHFISHTDFLAARRLISFLSASSSPYGDSTERLVHQFSSALFRRLTYCEAAATTTTTTPLTVTTSTAEVGSTSKLLITAEREKACGYIDENVERVELEEEAVQSCYLSLNQITPFVRFSHLTANQAILEAIDEGQQAIHVIDFDIMHGVQWPPLMQALAERTAYNDAAFYRPPPLLRITATGRDLNFLHKTGDRLSKFAQSLGLRFQFHPLLLLNDHDHHRLIPSALTLLPDEALAVNCVLYLHKLLKDDLQLLLHKIKALNPKVVTIAEKEANHNHPLFMQRFMEALNHYSLIFDSLEATLPPNSRERLAVEQIWFGREISDVVAAEGNGRRQRHERYESWEVMLRSLGFSNIPLSPFALSQAKLLLRLHYPSEGYQLQILHDSLFLGWQNRSLFSVSSWH 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44058399 44059742 - evm.model.ptg000003l.864 HCH6g0928 546422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0928 447 ProSiteProfiles GRAS family profile. 29 447 IPR005202 -
HCH6g0928 447 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 30 446 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0010014(PANTHER)|GO:0043565(PANTHER)
HCH6g0928 447 Pfam GRAS domain family 38 446 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0928 HCH-Chr6:44058399 HCH6g0938 HCH-Chr6:44180497 6.90E-52 dispersed
HCH6g0928 HCH-Chr6:44058399 HCH9g0424 HCH-Chr9:2657757 1.30E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33729 PF03514 GRAS 9.60E-119 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0928 K27746 - csv:101213853 539.265