Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0929 ATGGGTTCTTGCCATTCCTCTACTAACGGCAGTCGGCGTGCGGCGGTGATATCAGAAGTTGACGGCGGCGGTTCTGCTCCGGTAACTGCAGCTGGTTTAGCTGAAACTGAAGTCCCAACAGCTTCAACAACAAGTTCGTTTTCTTCTTCTTCTTCAACAAAGTATCTATCTTCAGTTAATTTAAAGAGCAGTGGGCGGCGTTGGTGGAAAAAGAAATCAAGTAAAGATTTTGGAACTGGTATTGGGGTTGGTTTGGATAAGGTTAATGAATTTGAGGTTCGTGGGGGGAGGTTATGTAGTAATGGGGCATCGAAAATCGCTTGTTTATATACTCAGCAAGGGAAGAAAGGTGTTAACCAAGATGCTATGATTGTACATGAGAATTTCAATTCAAGGAGTAATACAGTATTTTGCGGGGTATTTGATGGTCACGGTCCTTTTGGACATATGGTTGCCCAAAAGGTTCGGGATACCCTCCCTCTAATCCTGTGTACTCAATGGACATCTAAATCAAATGATGATCAAAGCAGCCTCTTTAAGACAGCAGATTCCAGAAGTACGAATTCTGAAGAATCTGTAGCTGCGGATGTTGATGATGATTGTTACAAGTCATTGGAGGCTGAGGAAAATGAAAAATTCCCCGAGATGTATCAGCCACTGAAAGTATCTATATTGAAGACCTTTAAACTAATGGATAAAGAGTTAAAATTACATCCTAAAATTGATTGTTTTTGCAGTGGATCGACAGCTGTAACTCTAATAAAGCAGGGTCAGGATCTTGTAATCGGAAACGTTGGTGACTCGAGAGCAGTGTTGGCTACAAGAGATGGCGAAAACTTTTTAATTGCAATTCAATTAACTGTGGACTTGAAGCCTGACCTTCCTGGTGAAGCTGCTAGGATCCAGCAATGCAAGGGAAGGGTATTTGCTTTGCAGGATGAGCCGGAGGTTGCACGAGTATGGTTGCCTAATAACGATTCACCTGGTCTGGCAATGGCCAGAGCTTTCGGGGATTTCTGTCTGAAGGATTTTGGTTTAATTTCTGTTCCAGATGTTTACTATCGTCGTCTTACCACGAGAGATCAATTTGTAATTCTCGCTACTGATGGGGTTTGGGACGTCCTCTCAAATCAGGAAGCTATTGAAATCGTGGCTTCAGCCCCCAGTCGTGAAACAGCAGCAAGAGCTCTCGTGGACTGTGCTGTCCGAGCATGGAGGCTTAAATATCCTACTTCCAAGAACGACGATTGTGCTGTTGTATGTCTCTTTCTCGATCATGAGCCTGCAGCTACTGAGATCGATGCAGGAGACAACACCACCTCTCAAGTAAATGCTGAGGAGGTTATCGCCACGCCAGACAACTATGCTAAAGATATGGAAGTAGATTCCGAATGTAGAACTGTTCTAGAGCGCTCAGGCACGCTTCAAGGCTGTAATGAGATCGAACCAATCTGCGACTCATCAGAGGAAAAGATTGCAGCCAAAGGTCGAAACCAGTCTAAGAGAAGCTTAGCTGAATGCATTTCAAATGAAGAGGAGGAATGGTCTGCCTTGGAAGGTATTACAAGAGTTAATAGTCTTCTAAGCCTTCCAAGATTTTTATCTGGGGATAGAAGATCAGCCAGTTGGAGGAAATGGCTATGA 1644 43.73 MGSCHSSTNGSRRAAVISEVDGGGSAPVTAAGLAETEVPTASTTSSFSSSSSTKYLSSVNLKSSGRRWWKKKSSKDFGTGIGVGLDKVNEFEVRGGRLCSNGASKIACLYTQQGKKGVNQDAMIVHENFNSRSNTVFCGVFDGHGPFGHMVAQKVRDTLPLILCTQWTSKSNDDQSSLFKTADSRSTNSEESVAADVDDDCYKSLEAEENEKFPEMYQPLKVSILKTFKLMDKELKLHPKIDCFCSGSTAVTLIKQGQDLVIGNVGDSRAVLATRDGENFLIAIQLTVDLKPDLPGEAARIQQCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCLKDFGLISVPDVYYRRLTTRDQFVILATDGVWDVLSNQEAIEIVASAPSRETAARALVDCAVRAWRLKYPTSKNDDCAVVCLFLDHEPAATEIDAGDNTTSQVNAEEVIATPDNYAKDMEVDSECRTVLERSGTLQGCNEIEPICDSSEEKIAAKGRNQSKRSLAECISNEEEEWSALEGITRVNSLLSLPRFLSGDRRSASWRKWL 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44069550 44074102 - evm.model.ptg000003l.863 HCH6g0929 546423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0929 547 PANTHER PROTEIN PHOSPHATASE 93 423 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH6g0929 547 CDD PP2Cc 106 424 IPR001932 -
HCH6g0929 547 MobiDBLite consensus disorder prediction 171 191 - -
HCH6g0929 547 SMART PP2C_4 97 422 IPR001932 -
HCH6g0929 547 Gene3D - 103 430 IPR036457 -
HCH6g0929 547 FunFam probable protein phosphatase 2C 33 101 427 - -
HCH6g0929 547 Pfam Protein phosphatase 2C 166 402 IPR001932 -
HCH6g0929 547 MobiDBLite consensus disorder prediction 171 192 - -
HCH6g0929 547 SUPERFAMILY PP2C-like 103 425 IPR036457 -
HCH6g0929 547 ProSiteProfiles PPM-type phosphatase domain profile. 106 424 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0517 HCH-Chr12:3021538 HCH6g0929 HCH-Chr6:44069550 6.70E-72 dispersed
HCH6g0929 HCH-Chr6:44069550 HCH8g0281 HCH-Chr8:15645117 2.90E-116 dispersed
HCH6g0929 HCH-Chr6:44069550 HCH2g0802 HCH-Chr2:51605235 4.10E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0929 - - - 0.0