Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0933 ATGGCATCCAGCTCTACCAAAAAACATGAACACTATAAGGGTATCCGGAGCCGGAGTGGCAAATGGGTGTCGGAGATTCGAGAGCCACGTAAAACTACTCGAATATGGCTCGGCACATACCCTACCCCGGAAATGGCAGCTACCGCCTATGATGTCGCCGCACTTGCTCTCAAAGGTCCCAATGCCGTTCTAAACTTCCCTGAATTAGTTGCCTCCTACCCGGTTCCGGCTTCGACATCGCCTACCGATATCCGCAATGCTGCTGCCGCTGCCGCTGCCTCGAGAAAGGTCGACGTAGACTCGGGAGAAGCCAATTATCAATATCAATATCAATATCAAAGTACAGTTCCAGGTGATAATTTCACTGACGGCTTTGTCGACGAGGAGGCACTGTTTGGAATGCCGAATTTGCTTGTTGACATGGCGGAGGGAATGTTGTTATCGCCGCCGAGAATGAACTCGTCGCCGTCTAGACATGATTACTATTCCTCTTGGAATTCAGGCGGGGATGGAGATTTATGGAGTTACCGTTAA 534 50.19 MASSSTKKHEHYKGIRSRSGKWVSEIREPRKTTRIWLGTYPTPEMAATAYDVAALALKGPNAVLNFPELVASYPVPASTSPTDIRNAAAAAAASRKVDVDSGEANYQYQYQYQSTVPGDNFTDGFVDEEALFGMPNLLVDMAEGMLLSPPRMNSSPSRHDYYSSWNSGGDGDLWSYR 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44141311 44141844 - evm.model.ptg000003l.859 HCH6g0933 546427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0933 177 SMART rav1_2 11 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0933 177 Pfam AP2 domain 11 59 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0933 177 SUPERFAMILY DNA-binding domain 11 68 IPR016177 GO:0003677(InterPro)
HCH6g0933 177 Gene3D AP2/ERF domain 10 69 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0933 177 PRINTS Ethylene responsive element binding protein signature 12 23 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0933 177 PRINTS Ethylene responsive element binding protein signature 49 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0933 177 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 110 IPR051032 -
HCH6g0933 177 MobiDBLite consensus disorder prediction 1 24 - -
HCH6g0933 177 CDD AP2 11 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0933 177 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0933 177 FunFam Ethylene-responsive transcription factor 2 10 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1190 HCH-Chr11:44199324 HCH6g0933 HCH-Chr6:44141311 3.60E-42 dispersed
HCH5g0472 HCH-Chr5:3204823 HCH6g0933 HCH-Chr6:44141311 2.60E-43 dispersed
HCH6g0933 HCH-Chr6:44141311 HCH9g0513 HCH-Chr9:3295237 4.60E-39 dispersed
HCH11g1189 HCH-Chr11:44189533 HCH6g0933 HCH-Chr6:44141311 2.50E-24 wgd
HCH5g0471 HCH-Chr5:3190079 HCH6g0933 HCH-Chr6:44141311 7.20E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33730 PF00847 AP2 9.50E-11 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0933 - - - 0.0