Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0938 ATGTTGGCTGGGTGTTCTAGTTCAACATTGCTGTCGCCGAGGAATCGATTGAGGAGTGAAGCATCAGCACAATACCAAGCTTGCCATTTGCAGTTACCTTCAATGAGCACACAGAGATTGGATTTGCCATGTAGCTTTTCCCGGAAAGATACTACTCGCTCGCAGCCCATTAGGCCGGTTGCGCTTTCAGTTGAGAAGCCGATTGAATCGAAAACCAATGGCTGTGCTCTCAAGCAGAATATCAGATTGCCTCCTTTGGCGACAAATCATCCATTGTTCATTGAGGGAAGGAGGGAGATCAAAGAAGAGTTTTGGAAGAAAGGTAAGAGTTTGAAAAGGTTTGCGGAGCAAGTTGGCGTCGACGAGTCTTGCATTAGCAGCGCGAAGAGGAAAAGAGGAAGCACAGATTATGGGGAAAAGGTTGATTTTCTTGAAGATGGAAGAGATAGCATGATTTTAAGTCAGTTTGGTGGTGGGAATTTTTGGTTTCAACCAGACTTAAGCGGGCCGCATTTGGTTCATGGAATTACGGGCCTTAATCCTGATGTTCCTTCCCCATTGACATGTTCTGGGGATGAGGAGGGAGTTTGCTTTTTGCCTAATGAAGTGATTTCCTCGCCTTCTCCATTCTTGGCAGAGATCACTGAGTTAGGTGAGAAGGATGGTGAGACTAGCCACAGGAGAGTACATGATGGGACGGGTTCGGGTTCGGGTTCCAGTTCTTCGTCCGAAAGTGAGAGATTCGCAGTGAGAACAAATGAGAATGTTGCAGAACAAGAAGTTGGTAATGGGTCCAGAAATCCTTATTATCCACATCAAGGTTCTGGATTGGATATGAGGGAGGTTGTTGACAATCAAGAAGAACAAGGGTTTGAGCTTATCAGCCTACTGGTAGCTTGTGTAGAAGCAATTGGATCAAAGAATATTGCATTGATCGGCCATCTGATAGATAAATTGGGGAATCTTGCTTCTCCAAGAGGACCTCCTATCAGCCGTCTTATCGCATATTACTCGGAAGCTCTAGCTCTTCGAGTCACCAGACTTTGGCCTCAGGTGTTTCATATAACGACTCCCCGGGATTTCGATCGGATTGAAGATGATAGCGGCACTGCACTGAGGCTTCTGAACGAGGTGAGCCCAATTCCGAAGTTTATTCACTTCACTTCGAATGAGATATTGCTGAGGGCTTTTGAAGGGAAAGACAGGGTTCACATCATAGACTTTGACATCAAGCAGGGGCTTCAATGGCCCAGTTTGTTCCAGAGTTTGGCTTCCAGAACAAATCCTCCAAGTCATGTCAGAATCACTGGCATTGGTGAGTCCAAGCAAGAATTGAATGAAACGGGAGATCGGCTCGCTGGATTTGCCGAGGCATTGAGCCTACCTTTTGAGTTCCACTCAGTGGTAGACCGGTTGGATGATGTTAGGCTGTGGATGCTTCACGTGAAGGAGCAAGAGAGTGTGGCTGTTAACTGTGTTCTCCAACTGCACAAAACCCTTTATGATGGGAATGGGGGAGCATTGAGAGACTTCTTGGGGTTGATCAGAAGCACAAATCCTGCCATTGTTCTTATGACCGAGCAAGAAGCCGAGCACAACGACTCGAAGTTGGAGATGAGAGTTTCAAATTCACTGAAGTACTACTCAGCCATATTCGACTCAGTTGATGCTAGCCTTCCATTAGAAAGCTCTGCCAGGTTGAAAATTGAGGAGATATATGCAAGGGAAATAAGGAACATCATAGCTTGTGAAGGAAGGGACAGGTTTGAAAGACATGTAAGTTTTGAGAAGTGGAAGAAGATGATGGAGCAAGGAGGATTTCGATGCGCCGGGATTCGTGACCGAGAATTACTTCAGAGCCAACTGCTGTTGAAGATGTACTCTTCAGAGGGTTATAATGTCAGAAAGCAAGGAGAAGATGGGGCAGCACTTACCCTTAACTGGGAAGATCAGTCTCTTTACACAGTCTCAGCATGGACACCAGTTGAAATTTCAGGAAGCTCATCTTCATTTACTCATCCAAGTTAA 2028 45.76 MLAGCSSSTLLSPRNRLRSEASAQYQACHLQLPSMSTQRLDLPCSFSRKDTTRSQPIRPVALSVEKPIESKTNGCALKQNIRLPPLATNHPLFIEGRREIKEEFWKKGKSLKRFAEQVGVDESCISSAKRKRGSTDYGEKVDFLEDGRDSMILSQFGGGNFWFQPDLSGPHLVHGITGLNPDVPSPLTCSGDEEGVCFLPNEVISSPSPFLAEITELGEKDGETSHRRVHDGTGSGSGSSSSSESERFAVRTNENVAEQEVGNGSRNPYYPHQGSGLDMREVVDNQEEQGFELISLLVACVEAIGSKNIALIGHLIDKLGNLASPRGPPISRLIAYYSEALALRVTRLWPQVFHITTPRDFDRIEDDSGTALRLLNEVSPIPKFIHFTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGESKQELNETGDRLAGFAEALSLPFEFHSVVDRLDDVRLWMLHVKEQESVAVNCVLQLHKTLYDGNGGALRDFLGLIRSTNPAIVLMTEQEAEHNDSKLEMRVSNSLKYYSAIFDSVDASLPLESSARLKIEEIYAREIRNIIACEGRDRFERHVSFEKWKKMMEQGGFRCAGIRDRELLQSQLLLKMYSSEGYNVRKQGEDGAALTLNWEDQSLYTVSAWTPVEISGSSSSFTHPS 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44180497 44182524 - evm.model.ptg000003l.854 HCH6g0938 546432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0938 675 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 258 659 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH6g0938 675 Pfam GRAS domain family 294 660 IPR005202 -
HCH6g0938 675 MobiDBLite consensus disorder prediction 219 276 - -
HCH6g0938 675 ProSiteProfiles GRAS family profile. 284 660 IPR005202 -
HCH6g0938 675 MobiDBLite consensus disorder prediction 231 270 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0562 HCH-Chr14:34537490 HCH6g0938 HCH-Chr6:44180497 9.80E-46 dispersed
HCH6g0928 HCH-Chr6:44058399 HCH6g0938 HCH-Chr6:44180497 6.90E-52 dispersed
HCH6g0938 HCH-Chr6:44180497 HCH9g0872 HCH-Chr9:6250684 4.90E-65 dispersed
HCH6g0938 HCH-Chr6:44180497 HCH9g0424 HCH-Chr9:2657757 1.80E-56 transposed
HCH6g0938 HCH-Chr6:44180497 HCH10g1334 HCH-Chr10:45879793 1.80E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33731 PF03514 GRAS 8.50E-126 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0938 K27749 - vvi:100247949 954.896