Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0940 ATGTGGCTTCTTTTGATTGGAGCTATTTCTGTTTTAAGTATTGCACGTTGGCTTTATAACTGGAAAAATCCCAAATGTAATGGAAAACTTCCACCAGGTTCAATGGGATTTCCTTTACTTGGTGAAACCCTGCAGTTCTTTGCTCCCAATACCTCTTCTGATATTCCTCCTTTTATCAGAAAGAGAATGGATAGGTACGGACCGATATTCAGGACTAGTTTGGTTGGAAAACCAGTTATTGTCTCAGCAGACCCTGACTTCAGTTACTTCATCTTTCAACAAGAGGGACAGTTGTTCCAGAGCTGGTATCCAGATACCTTCACAGAGATATTTGGAAGGCAAAATGTTGGTTCCTTGCATGGCTTCATGTATAAATATCTAAAGAACATGGTTCTTCATCTTTTTGGTCCTGAAAGTCTGAAAAAGATGATTCCTGAAGTTGAAGCTGTTGCAACTGCAAGATTGAGACGGTGGTCGTCTCATAACGCACTTGAAATGAAGGACGAGACTGCAAGTATGATATTTGATCTGACTGCTAAGAAGCTGATTAGTTATGATCAAGAACATTCGTCAGAGAATTTGAGAGATAACTTTGTTGCATTCATTCAGGGTTTGATCTCCTTCCCTCTAGATATTCCTGGAACAGCTTATCACAAATGCTTGCAGGGAAGGAAAAGAGCGATGAGGATGCTGAAAAACATGCTACAAGAAAGGCGGGAAAATCCAAGGAAACAACAAACTGATTTTTTTGATTTTGTTCTTGAAGAACTTCAGAAAGATGGAACACTCCTCACTGAGGAAATTGCTTTAGACCTGATGTTTGTGCTACTTTTTGCAAGCTTTGAAACTACTTCACTTGCTCTAACTGCAGCCGTTAAATTTCTCATTGATCACCCTCATGTGCTGAAGGAGTTAACGGCAGAACATGATGCAATTCTGAAGGAAAGGGACAATGCAGATTCTGGACTTACCTGGAAAGAATACAAATCCATGAAATTCACATTTCAGTTCATCAATGAAACTGTGAGACTCGCAAATATTGTTCCAGGAATCTTTCGAAAAGCACTGAAAGAGGTCAATTTTAAGGGATTTACCATTCCAGCAGGGTGGTCCATCATGGTCTGTCCTCCGGCCGTGCACTTGAATCCAGAAAAGTACGTCGACCCCATCGCCTTCAATCCACAGAGATGGGAGAAAACTGAATTGAATGGGGCATCTAAACATTTCATGGCTTTTGGTGGGGGCATGAGATTTTGTGTTGGTACAGATTTTACCAAAGTGCAGATGGCTGTATTTCTCCATTGCCTGGTTACAAAGTACCGGTTCAAAGCAATCAAAGGAGGCAATATCGTCCGAACGCCCGGTTTACAATTTCCTGATGGCTTTCACATCCAGATTGTGGAGAAAGAGTAA 1413 41.05 MWLLLIGAISVLSIARWLYNWKNPKCNGKLPPGSMGFPLLGETLQFFAPNTSSDIPPFIRKRMDRYGPIFRTSLVGKPVIVSADPDFSYFIFQQEGQLFQSWYPDTFTEIFGRQNVGSLHGFMYKYLKNMVLHLFGPESLKKMIPEVEAVATARLRRWSSHNALEMKDETASMIFDLTAKKLISYDQEHSSENLRDNFVAFIQGLISFPLDIPGTAYHKCLQGRKRAMRMLKNMLQERRENPRKQQTDFFDFVLEELQKDGTLLTEEIALDLMFVLLFASFETTSLALTAAVKFLIDHPHVLKELTAEHDAILKERDNADSGLTWKEYKSMKFTFQFINETVRLANIVPGIFRKALKEVNFKGFTIPAGWSIMVCPPAVHLNPEKYVDPIAFNPQRWEKTELNGASKHFMAFGGGMRFCVGTDFTKVQMAVFLHCLVTKYRFKAIKGGNIVRTPGLQFPDGFHIQIVEKE 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44195356 44197912 - evm.model.ptg000003l.852 HCH6g0940 546434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0940 470 PRINTS E-class P450 group I signature 375 399 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0940 470 PRINTS E-class P450 group I signature 419 442 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0940 470 PRINTS E-class P450 group I signature 288 314 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0940 470 PRINTS E-class P450 group I signature 409 419 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0940 470 PRINTS E-class P450 group I signature 335 353 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0940 470 PRINTS E-class P450 group I signature 268 285 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0940 470 PRINTS E-class P450 group I signature 63 82 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0940 470 Pfam Cytochrome P450 31 452 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0940 470 PRINTS P450 superfamily signature 410 419 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0940 470 PRINTS P450 superfamily signature 279 296 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0940 470 PRINTS P450 superfamily signature 419 430 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0940 470 PRINTS P450 superfamily signature 336 347 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0940 470 FunFam Cytochrome P450 family protein 22 468 - -
HCH6g0940 470 SUPERFAMILY Cytochrome P450 27 464 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0940 470 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 412 421 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
HCH6g0940 470 CDD CYP90-like 62 468 - -
HCH6g0940 470 Gene3D Cytochrome P450 22 468 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH6g0940 470 PANTHER CYTOCHROME P450 26 29 440 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0208 HCH-Chr1:30058158 HCH6g0940 HCH-Chr6:44195356 5.50E-112 dispersed
HCH3g1122 HCH-Chr3:33024937 HCH6g0940 HCH-Chr6:44195356 1.50E-86 dispersed
HCH4g0740 HCH-Chr4:4776752 HCH6g0940 HCH-Chr6:44195356 2.50E-58 dispersed
HCH6g0114 HCH-Chr6:1443161 HCH6g0940 HCH-Chr6:44195356 8.90E-72 dispersed
HCH6g0940 HCH-Chr6:44195356 HCH6g1312 HCH-Chr6:47261063 6.60E-61 dispersed
HCH10g0131 HCH-Chr10:1062900 HCH6g0940 HCH-Chr6:44195356 1.80E-127 transposed
HCH3g0264 HCH-Chr3:1689574 HCH6g0940 HCH-Chr6:44195356 1.50E-116 transposed
HCH3g1121 HCH-Chr3:33023845 HCH6g0940 HCH-Chr6:44195356 2.60E-25 transposed
HCH5g0448 HCH-Chr5:3017407 HCH6g0940 HCH-Chr6:44195356 1.10E-10 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0940 - - - 0.0