Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0944 ATGGCATCATCATCTTCCAGCAACAGCAGCAGCAGCTACGATATGCCATGGGTGGAGAAATACAGGCCCAGCAAAGTCTCTGACATCGTCGGCAACGAAGACGCAGTCTCTAGGCTTCAAGTCATTGCTCGTGACGGCAACATGCCCAATCTCATACTATCCGGCCCACCAGGAACTGGAAAAACGACTAGTATATTGGCTCTTGCTCATGAGCTTTTGGGTGCTAATTATAAGGAGGGTGTTTTGGAGCTTAATGCATCTGATGATAGGGGGATAGATGTTGTGAGGAATAAAATTAAGATGTTTGCTCAAAAGAAAGTGACGCTGCCTCCCGGTCGACATAAAGTTGTTATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGAGAACGATGGAAATATATTCAAACACTACACGTTTTGCCCTTGCATGTAATACATCCTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAATGGATCAAGAGATACTTGGCCGTCTCATGGTGGTACTTCAAGAAGAAAAGGTTCCGTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCATTGAATAATTTGCAAGCCACATACAGTGGATTCCGCTTTGTTAACCAAGACAATGTTTTCAAGGTCTGTGATCAACCTCATCCGCTACATGTGAAGAATGTGGTGCGTAATGTGCTCGAAGGTAAATTCGACGATGCTTGTGGGGGTCTCAAGCAACTGTACGACTTGGGGTACTCTCCAACAGACATAATAACCACCCTTTTCCGCATCATCAAGAATTATGATATGGCTGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGCGGATTTGTGACGGAGTCGGTTCTTACCTCCAACTATGTGGTCTTTTGGCTAAGCTTTCCGTTGTTCGCGAGACTGCCAAAGCGGCATGA 1002 44.21 MASSSSSNSSSSYDMPWVEKYRPSKVSDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGANYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLMDQEILGRLMVVLQEEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACGGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSVVRETAKAA 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44225786 44229810 - evm.model.ptg000003l.848 HCH6g0944 546438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0944 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 235 IPR027417 -
HCH6g0944 333 Gene3D - 237 329 - -
HCH6g0944 333 Pfam ATPase family associated with various cellular activities (AAA) 51 169 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
HCH6g0944 333 CDD HLD_clamp_RFC 172 234 IPR047854 -
HCH6g0944 333 Pfam Replication factor C C-terminal domain 237 322 IPR013748 -
HCH6g0944 333 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 15 326 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
HCH6g0944 333 Gene3D - 8 172 IPR027417 -
HCH6g0944 333 FunFam Replication factor C subunit 4 9 172 - -
HCH6g0944 333 CDD AAA 30 167 - -
HCH6g0944 333 SMART AAA_5 47 179 IPR003593 GO:0016887(InterPro)
HCH6g0944 333 FunFam Replication factor C subunit 4 173 236 - -
HCH6g0944 333 FunFam replication factor C subunit 2 237 329 - -
HCH6g0944 333 SUPERFAMILY post-AAA+ oligomerization domain-like 236 327 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
HCH6g0944 333 Gene3D - 173 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0832 HCH-Chr12:5424584 HCH6g0944 HCH-Chr6:44225786 2.80E-53 dispersed
HCH13g0142 HCH-Chr13:912996 HCH6g0944 HCH-Chr6:44225786 1.00E-53 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0944 K10755 - csv:101208984 625.55