Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0945 ATGGAATCTTCCAGGTCACCGACCGGATCATCATCCGACGATATCGTCGATACGACGCCATTGATGGGAAATCCAAACCGATCGCCTGACGATACGTATTCCGGTCGTCGATTTGTTCAGAGACAGAGTCTTCGTCAGGCGGCGAGGCTTCTGAGGCAAGCTAGTAGTCTTAGGACGATGCGTGAGCCGTCTATGTTAGTCCGTGAGACGGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCCTATTCGAAGCCGGTTGTGATTCTTGATATTGTTTGGAATTTCGCTTTTGTGGTTGTTGCAGCGACTGTTTTGTTTCTGAGCCGAATTGAGGCTCCGACGGTGCCTTTAAGGCTGTGGATTTTGGGGTATGCGTTCCAGTGCGTTCTTCATATGGTGTGTGTTTGTGTTGAGTATCGTCGGCGTCAGCAACGTCGGTATCCGGTGTTTAATTCGTCGGAAGAGGGAAATGTGATGCGTGGGCAATCGGGGTTGGGTTCGAGGGGAAGCTCGAGTCAGTATGCGGCATTGGCACAATTGGATGATGACGGTACCAGTGTAGCAAAGCATCTCGAATCCGCAAATACAATGTTTTCATTTATCTGGTGGATTATTGGATTCTACTGGGTATCAGTAGGAAGTCAATCTTTAGCCCACGTCTCCCCTATGCTTTACTGGTTATCTATCATATTCTTGGGTTTTGATGTGTTCTTTGTCGTTTTTTGTGTTGCTTTGGCATGTATAATCGGAATTGCCGTTTGCTGTTGTCTTCCCTGTATCATTGCCCTTTTATATGCTGTGGCAGACCAGGAAGGAGCAACCAAAGAAGATGTTGAACAATTAACAAAATTTAAATTCAGAAAGGTTGATGATGCTGAGAAACTTTCCGCCGATGTACAAGAACCTCTTGGTGGGATAATGATTGAGTGTGGTACAGATTCTCCCATTGAACACACTCTCTCACAGGAGGATGCGGAGTGTTGCATCTGCCTCTTAGCATATGAAGATGATGTTGAGCTGAGAGAACTCCCGTGCGGTCACCACTTTCACTGTGCATGCATCGATAAGTGGCTGTACATTAATGCTACCTGCCCTCTCTGCAAGTACAACATTTTGAAAAGTAGTGATCTTGCGCAAGAAGTCTAA 1152 46.7 MESSRSPTGSSSDDIVDTTPLMGNPNRSPDDTYSGRRFVQRQSLRQAARLLRQASSLRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLFLSRIEAPTVPLRLWILGYAFQCVLHMVCVCVEYRRRQQRRYPVFNSSEEGNVMRGQSGLGSRGSSSQYAALAQLDDDGTSVAKHLESANTMFSFIWWIIGFYWVSVGSQSLAHVSPMLYWLSIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLTKFKFRKVDDAEKLSADVQEPLGGIMIECGTDSPIEHTLSQEDAECCICLLAYEDDVELRELPCGHHFHCACIDKWLYINATCPLCKYNILKSSDLAQEV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44232508 44237372 + evm.model.ptg000003l.847 HCH6g0945 546439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0945 383 FunFam E3 ubiquitin-protein ligase At1g12760 315 380 - -
HCH6g0945 383 SMART ring_2 329 369 IPR001841 -
HCH6g0945 383 ProSiteProfiles Zinc finger RING-type profile. 329 370 IPR001841 -
HCH6g0945 383 MobiDBLite consensus disorder prediction 1 34 - -
HCH6g0945 383 SUPERFAMILY RING/U-box 320 376 - -
HCH6g0945 383 Pfam Ring finger domain 328 370 IPR001841 -
HCH6g0945 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 378 IPR013083 -
HCH6g0945 383 PANTHER TARGET OF ERK KINASE MPK-1 44 374 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0945 HCH-Chr6:44232508 HCH7g1596 HCH-Chr7:48256709 3.40E-124 dispersed
HCH6g0945 HCH-Chr6:44232508 HCH9g1235 HCH-Chr9:32208277 1.20E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0945 - - - 0.0