Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0949 ATGGCTTTCTTGTTTTGCTACTCGAGCTTCATCTTCATCTTCTTCTTCTTTTCGATGTCGGGGATCACCATTAGATCGGCGTCTGCCATATTTCGGCCGAGCCCATGGCAGCTCGCACATGCCACCTTCTATGGGGACGAGACGGCCTCCGAAACCATGGGTGGAGCTTGTGGATATGGAAACTTGTTTGTGAATGGGTATGGAGTGGACACTGTAGCTTTGAGCTCGACATTGTTCAATAATGGCTATGCTTGTGGAAGTTGCTTTCAGATAAAGTGTGTGCAATCCAAAGCCTGCAACACTCGAGTTGCTTACACGACGGTGACGGCGACGAACCTCTGCCCGCCGAATTGGGCAAAACCTTCCAACAATGGAGGGTGGTGCAACCCACCTAGGGTTCATTTTGACATGTCCAAACCTGCCTTCATGAAAATCGCTTGGTGGAAGGCCGGCATTGTCCCTGTCATGTACCGCAGGGTAGCATGTGGGAAGAAAGGTGGACTTCGATTCACATTCCAAGGGAATGGATATTGGTTATTGGTGTATGCAATGAACGTGGGAGGAGGAGGAGATATATCAAGCATGTGGGTAAAAGGAAGCAAAACAGGATGGATAAAAATGAGTCATAATTGGGGAGCTTCATATCAAGCATTTGCAACATTGGTTGGACAATCTCTCTCTTTCAGAATCACTTCTTACACCACCAAAGAAACCATCACTGCTTGGAATGTTGCTCCTTCTAATTGGAGATTTGGTTCCACTTACCAATCTAATCTCAACTTCCCTTAG 789 46.89 MAFLFCYSSFIFIFFFFSMSGITIRSASAIFRPSPWQLAHATFYGDETASETMGGACGYGNLFVNGYGVDTVALSSTLFNNGYACGSCFQIKCVQSKACNTRVAYTTVTATNLCPPNWAKPSNNGGWCNPPRVHFDMSKPAFMKIAWWKAGIVPVMYRRVACGKKGGLRFTFQGNGYWLLVYAMNVGGGGDISSMWVKGSKTGWIKMSHNWGASYQAFATLVGQSLSFRITSYTTKETITAWNVAPSNWRFGSTYQSNLNFP 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44316205 44317571 - evm.model.ptg000003l.843 HCH6g0949 546443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0949 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 167 IPR007112 -
HCH6g0949 262 Pfam Lytic transglycolase 71 157 IPR009009 -
HCH6g0949 262 Gene3D - 21 162 IPR036908 -
HCH6g0949 262 Pfam Expansin C-terminal domain 169 246 IPR007117 -
HCH6g0949 262 Gene3D - 163 261 IPR036749 -
HCH6g0949 262 SUPERFAMILY PHL pollen allergen 164 257 IPR036749 -
HCH6g0949 262 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576(InterPro)
HCH6g0949 262 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576(InterPro)
HCH6g0949 262 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576(InterPro)
HCH6g0949 262 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576(InterPro)
HCH6g0949 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576(InterPro)
HCH6g0949 262 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576(InterPro)
HCH6g0949 262 CDD DPBB_EXPA_N 35 162 - -
HCH6g0949 262 PANTHER EXPANSIN-A15 19 257 IPR002963 GO:0009664(InterPro)
HCH6g0949 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 257 IPR007117 -
HCH6g0949 262 SMART dpbb_1 71 157 IPR007112 -
HCH6g0949 262 SUPERFAMILY Barwin-like endoglucanases 35 185 IPR036908 -
HCH6g0949 262 PRINTS Expansin signature 243 259 IPR002963 GO:0009664(InterPro)
HCH6g0949 262 PRINTS Expansin signature 66 80 IPR002963 GO:0009664(InterPro)
HCH6g0949 262 PRINTS Expansin signature 125 142 IPR002963 GO:0009664(InterPro)
HCH6g0949 262 PRINTS Expansin signature 178 199 IPR002963 GO:0009664(InterPro)
HCH6g0949 262 PRINTS Expansin signature 106 116 IPR002963 GO:0009664(InterPro)
HCH6g0949 262 PRINTS Expansin signature 142 155 IPR002963 GO:0009664(InterPro)
HCH6g0949 262 PRINTS Expansin signature 166 178 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0455 HCH-Chr5:3064844 HCH6g0949 HCH-Chr6:44316205 1.10E-118 dispersed
HCH6g0949 HCH-Chr6:44316205 HCH9g0677 HCH-Chr9:4503623 3.10E-76 dispersed
HCH6g0949 HCH-Chr6:44316205 HCH2g1077 HCH-Chr2:53739421 1.40E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0949 - - - 0.0