Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0960 ATGAATTTGAGCATGAGAAGGGTATATTGGTTTTGTCTTTCTCATGCTCTTTTTTTGTGCTTGATTCTGTTTCTTTTCAGCATTACACCTATGGTGTCTGCTGCAGCTACTGAGAAGGATATTTTGTTACAATTCAAAGATTCTATTACAGATGATCCTTTTGATTTCTTGAGAACTTGGGTTGTTAATGAGGATCATTGCCAAAATTACAGTGGTGTGTTCTGTAACTCAGATGGGTTTGTGGAAAAGATACTTTTATGGAACACTAGTTTGGTCGGAAAGTTGTCGCCGGCCTTATCGGGTTTGAAATCGTTGAGGACTTTGACATTGTATGGAAATAGGTTCACTGGTAACATTCCAGATACATATGGTGATATTCTAACATTGTGGAAGATCAATTTGAGCTCAAATGCTTTATCTGGTTCTGTCCCTGAGTTTATCGGTAATTTGCCAAGCATTCGGTTTCTGGACTTGTCTAGGAATGAGTTAACTGGGGGGATACCATCAGCTTTGTTCAAGAACTGTAATAAAACGCGATTTGTTTCACTTTCTCATAACAGCCTTTCAGGTATGATACCTACATCCATTTTGAGTTGCTTAAATCTTGAAGGGTTTGATTTCTCAAACAATAATATAAGAGGGAGCATTCCTCTGCGAATTTGTGATATTCCAAGTTTAGAGTATGTTTCAGTGAGAAGCAATGCACTATCCGGGAGGGTTCAGGGGCAGTTTTCGGCATGTCTAAGCTTGAAATTTGTGGATCTCAGTAGCAACTCATTTACTGGGTTGCCGCCATTCGAGGTTCTTGGATTAAAAAACATCACTCATTTTAATGTTTCATATAATGGGTTTAATGGGGCAATTCCAGAGATTCTGGCTTGTGGTGATAAACTGGAAGTTTTTGATGTTTCAGGGAATGTATTGGATGGAGAAATCCCATTGAGCATTACAAAGTGTGGAAGTCTTAAAATCTTGGATTTGGGGTATAACAAGCTAAATGGCATGATTCCTGCTGAAATTGCAGATATGAAAAAGCTTTTGGTGATTCGTTTGGGTAGTAATTCGATTAGCGGGACGGTTCCAGCAAACTTTGGGAACATTGAGCTTCTTCAGGTTTTAAGTTTGCACAATCTCAACCTTGTTGGTGAAATTCCTGATAATATAACCAGTTGCAGATTTCTCCTTGAGCTGGATGTTTCCAGCAATGCATTGGAGGGAAGAATTCCTCAATCTCTTTACAACATGACATATCTTGTTATTCTTGATCTACACGATAACCGTCTGAATGGAACCATTCCACCAACTCTAGGGAGCCTTTCAAAACTCCAATTTCTGGATCTATCTCAAAACCGGCTGTCTGGTTCAATACCACTTACTCTTGAAAATTTGACAATGCTGCACCATTTTAATGTCTCCTTTAATAACCTTTCGGGCATCATACCTCCCATAAAGATAATCCAAGATTTTGGGCCTTCTGCATTTTCAAACAATCCTTTGCTTTGTGGTGCTCCTCTGAGTTCTTGCTCTGCAAATAACTCTGGAACGACTGCTGCATCAAAAAAGCCAAAAGTTCTTAGTCCATCAGCAATCATTGCAATTGTTGCAGCTGTGGTGATCCTGACTGGGGTCTGTGTGATATCCATTTTGAACATAATGGCTCGTAGGAGGAAGGCGAAGAGCGCCATAATTATTGAGAGCACGCCACTTGGTTCGACAGATTCAGGCGTCATAATTGGGAAATTGGTTCTTTTCAGCAAGACTCTGCCATCAAAGTATGAAGATTGGGAGGCTGGCACTAAAGCGTTGCTCGATAAGGAATGTCTCATAGGAGGTGGCTCTATTGGCACTGTCTACAGAACAAATTTTGACAGCGGAATCTCAATCGCGGTGAAGAAGTTGGAGACTCTTGGAAGGATCAGAAGCCAAGATGAGTTTGAAACTGAAATCGGACGTTTGGGAAACATTAGACACCCTAATTTAGTTGCTTTTCAGGGATACTATTGGTCCTCATCCATGCAGTTGATTCTATCTGAATTTGTCCCAAATGGCAATTTGTATGACAATCTACATGGTCTGAATTACCCAGGCACCAGCACTGGCATTGGCAATACTGAATTACATTGGTCTAGGAGATTTCAGATTGCACTTGGAACAGCTAGAGCTCTGGATAACCTTCATCATGATTGTAGGCCTCCAATCCTTCACCTCAACATGAAATCTACTAATATACTCTTAGATGAAAACTACGAAGCGAAATTGTCAGATTACGGATTGGGAAAATTGCTTCCAGTTTTGGACAATTACGTCTTAACCAAATACCATACCGCTGTAGGCTACGTTGCACCGGAGCTGGCTCAAAGTTTGAGAGTTAGCGAAAAATGTGATGTCTATAGTTTTGGAGTAATTCTATTGGAGCTAGTAACAGGGAGGAAGCCAGTGGAGAGTCCAAGAGCAAACCAGGTAGTGATCTTGTGTGAATATGTAAGGGAGCTGTTGGAAAGTGGCTCTGCTTCTGATTGTTTCGATCGAAATTTACGTGGTATATCCGAGAACGAGCTAATACAAGTGATGAAGCTGGGGTTGATTTGTACATCCGAGATCCCTTCGAAGAGACCGAGCATGGCGGAGGTTGTTCAAGTTCTAGAGTCCATAAGAAATGGATTAGGATCATAG 2673 40.78 MNLSMRRVYWFCLSHALFLCLILFLFSITPMVSAAATEKDILLQFKDSITDDPFDFLRTWVVNEDHCQNYSGVFCNSDGFVEKILLWNTSLVGKLSPALSGLKSLRTLTLYGNRFTGNIPDTYGDILTLWKINLSSNALSGSVPEFIGNLPSIRFLDLSRNELTGGIPSALFKNCNKTRFVSLSHNSLSGMIPTSILSCLNLEGFDFSNNNIRGSIPLRICDIPSLEYVSVRSNALSGRVQGQFSACLSLKFVDLSSNSFTGLPPFEVLGLKNITHFNVSYNGFNGAIPEILACGDKLEVFDVSGNVLDGEIPLSITKCGSLKILDLGYNKLNGMIPAEIADMKKLLVIRLGSNSISGTVPANFGNIELLQVLSLHNLNLVGEIPDNITSCRFLLELDVSSNALEGRIPQSLYNMTYLVILDLHDNRLNGTIPPTLGSLSKLQFLDLSQNRLSGSIPLTLENLTMLHHFNVSFNNLSGIIPPIKIIQDFGPSAFSNNPLLCGAPLSSCSANNSGTTAASKKPKVLSPSAIIAIVAAVVILTGVCVISILNIMARRRKAKSAIIIESTPLGSTDSGVIIGKLVLFSKTLPSKYEDWEAGTKALLDKECLIGGGSIGTVYRTNFDSGISIAVKKLETLGRIRSQDEFETEIGRLGNIRHPNLVAFQGYYWSSSMQLILSEFVPNGNLYDNLHGLNYPGTSTGIGNTELHWSRRFQIALGTARALDNLHHDCRPPILHLNMKSTNILLDENYEAKLSDYGLGKLLPVLDNYVLTKYHTAVGYVAPELAQSLRVSEKCDVYSFGVILLELVTGRKPVESPRANQVVILCEYVRELLESGSASDCFDRNLRGISENELIQVMKLGLICTSEIPSKRPSMAEVVQVLESIRNGLGS 890
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 44410901 44413669 - evm.model.ptg000003l.832 HCH6g0960 546454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0960 890 FunFam Putative LRR receptor-like serine/threonine-protein kinase 580 679 - -
HCH6g0960 890 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 680 890 - -
HCH6g0960 890 Gene3D Ribonuclease Inhibitor 223 516 IPR032675 -
HCH6g0960 890 Pfam Leucine rich repeat N-terminal domain 36 76 IPR013210 -
HCH6g0960 890 ProSiteProfiles Protein kinase domain profile. 603 884 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0960 890 SUPERFAMILY L domain-like 201 508 - -
HCH6g0960 890 ProSiteProfiles Leucine-rich repeat profile. 441 464 IPR001611 GO:0005515(InterPro)
HCH6g0960 890 Pfam Protein kinase domain 607 879 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0960 890 Pfam Leucine Rich Repeat 152 172 IPR001611 GO:0005515(InterPro)
HCH6g0960 890 Pfam Leucine Rich Repeat 104 122 IPR001611 GO:0005515(InterPro)
HCH6g0960 890 Pfam Leucine Rich Repeat 249 267 IPR001611 GO:0005515(InterPro)
HCH6g0960 890 Pfam Leucine Rich Repeat 418 439 IPR001611 GO:0005515(InterPro)
HCH6g0960 890 Pfam Leucine Rich Repeat 321 342 IPR001611 GO:0005515(InterPro)
HCH6g0960 890 Pfam Leucine Rich Repeat 441 463 IPR001611 GO:0005515(InterPro)
HCH6g0960 890 Pfam Leucine Rich Repeat 129 150 IPR001611 GO:0005515(InterPro)
HCH6g0960 890 CDD STKc_IRAK 609 884 - -
HCH6g0960 890 PRINTS Leucine-rich repeat signature 439 452 - -
HCH6g0960 890 PRINTS Leucine-rich repeat signature 322 335 - -
HCH6g0960 890 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 35 172 - -
HCH6g0960 890 SUPERFAMILY Protein kinase-like (PK-like) 604 882 IPR011009 -
HCH6g0960 890 PANTHER OS05G0588300 PROTEIN 219 340 IPR050994 -
HCH6g0960 890 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 173 263 - -
HCH6g0960 890 Gene3D Ribonuclease Inhibitor 35 198 IPR032675 -
HCH6g0960 890 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 292 512 - -
HCH6g0960 890 Gene3D Transferase(Phosphotransferase) domain 1 680 888 - -
HCH6g0960 890 Gene3D Phosphorylase Kinase; domain 1 579 679 - -
HCH6g0960 890 SUPERFAMILY L domain-like 80 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0960 HCH-Chr6:44410901 HCH7g0902 HCH-Chr7:34129620 6.80E-83 dispersed
HCH5g0755 HCH-Chr5:5559540 HCH6g0960 HCH-Chr6:44410901 2.00E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81582 PF00069 Pkinase 1.90E-33 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0960 - - - 0.0